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ACD58_15

Alias: ACD58_30653.22938.10

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD58_15_1

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124..1143
DNA (1020bp) protein (340aa)
hypothetical protein
helix-turn-helix, type 11 domain-containing protein n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC56AF (db=UNIREF evalue=3.0e-43 bit_score=179.0 identity=38.94 coverage=94.4117647058823)
seg (db=Seg db_id=seg from=151 to=163)
seg (db=Seg db_id=seg from=208 to=218)
ACD58_15_2

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comp(1176..2405)
DNA (1230bp) protein (410aa)
ATP-dependent RNA helicase RhlE
DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9BACT (db=UNIREF evalue=3.0e-87 bit_score=325.0 identity=45.19 coverage=90.0)
seg (db=Seg db_id=seg from=27 to=39)
ACD58_15_3

Not on your lists

comp(2672..3586)
DNA (915bp) protein (305aa)
2672..3586 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD56513.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_4

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comp(3597..4706)
DNA (1110bp) protein (370aa)
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA (db=UNIREF evalue=6.0e-102 bit_score=374.0 identity=61.69 coverage=94.0540540540541)
seg (db=Seg db_id=seg from=235 to=249)
ACD58_15_5

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comp(4693..6462)
DNA (1770bp) protein (590aa)
hypothetical protein
hypothetical protein
DNA primase n=5 Tax=Dehalococcoides RepID=Q3Z903_DEHE1 (db=UNIREF evalue=3.0e-90 bit_score=336.0 identity=39.37 coverage=76.6101694915254)
coiled-coil (db=Coil db_id=coil from=567 to=588 evalue=NA)
ACD58_15_6

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comp(6514..7431)
DNA (918bp) protein (306aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Butyrivibrio fibrisolvens 16/4 RepID=D4J145_BUTFI (db=UNIREF evalue=6.0e-22 bit_score=108.0 identity=32.18 coverage=62.7450980392157)
Cu-oxidase_4 (db=HMMPfam db_id=PF02578 from=78 to=298 evalue=8.2e-42 interpro_id=IPR003730 interpro_description=Multi-copper polyphenol oxidoreductase, laccase)
CNF1/YfiH-like putative cysteine hydrolases (db=superfamily db_id=SSF64438 from=93 to=304 evalue=4.8e-38 interpro_id=IPR011324 interpro_description=Cytotoxic necrotizing factor-like, catalytic)
ACD58_15_7
Capnocytophaga sp. oral taxon 338, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7624..8379
DNA (756bp) protein (252aa)
DNA-binding protein
seg (db=Seg db_id=seg from=219 to=235)
putative DNA-binding protein alias= id=86462 tax=ACD58 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=ACD58 organism_desc=ACD58
DNA-binding protein {ECO:0000313|EMBL:EGD35213.1}; TaxID=888059 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral
ACD58_15_8

Not on your lists

8367..8768
DNA (402bp) protein (134aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MHT6_9FIRM (db=UNIREF evalue=3.0e-22 bit_score=107.0 identity=55.05 coverage=80.5970149253731)
seg (db=Seg db_id=seg from=82 to=95)
seg (db=Seg db_id=seg from=110 to=132)
ACD58_15_9

Not on your lists

8821..9102
DNA (282bp) protein (94aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JI66_9ARCH (db=UNIREF evalue=2.0e-23 bit_score=111.0 identity=59.09 coverage=92.5531914893617)
Uncharacterized protein {ECO:0000313|EMBL:EKD56499.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_10

Not on your lists

9123..9290
DNA (168bp) protein (56aa)
9123..9290 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD56500.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_11

Not on your lists

9322..9558
DNA (237bp) protein (79aa)
putative endonuclease containing a URI domain
GIY-YIG (db=HMMPfam db_id=PF01541 from=2 to=58 evalue=9.5e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=76 evalue=2.9e-06 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Uncharacterized protein {ECO:0000313|EMBL:EKD56501.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_12

Not on your lists

9549..9971
DNA (423bp) protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
seg (db=Seg db_id=seg from=116 to=136)
ACD58_15_13

Not on your lists

9979..10416
DNA (438bp) protein (146aa)
pyrophosphohydrolase
seg (db=Seg db_id=seg from=69 to=84)
Nudix (db=superfamily db_id=SSF55811 from=16 to=142 evalue=3.3e-21 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=15 to=127 evalue=6.9e-18 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD58_15_14

Not on your lists

10435..11202
DNA (768bp) protein (256aa)
seg (db=Seg db_id=seg from=17 to=30)
seg (db=Seg db_id=seg from=131 to=144)
seg (db=Seg db_id=seg from=234 to=249)
Uncharacterized protein {ECO:0000313|EMBL:EKD56504.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_15

Not on your lists

11250..11594
DNA (345bp) protein (115aa)
seg (db=Seg db_id=seg from=93 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
ACD58_15_16

Not on your lists

11745..13184
DNA (1440bp) protein (480aa)
Putative peptidase family M23/M37 n=1 Tax=uncultured marine microorganism HF4000_ANIW93N21 RepID=B3T352_9ZZZZ (db=UNIREF evalue=1.0e-10 bit_score=71.6 identity=22.33 coverage=71.0416666666667)
seg (db=Seg db_id=seg from=26 to=40)
seg (db=Seg db_id=seg from=94 to=134)
seg (db=Seg db_id=seg from=177 to=191)
ACD58_15_17

Not on your lists

13375..14532
DNA (1158bp) protein (386aa)
hypothetical protein (db=KEGG evalue=7.0e-21 bit_score=105.0 identity=21.1 coverage=76.9430051813471)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=6 to=17)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=53 to=355 evalue=6.6e-22)
ACD58_15_18

Not on your lists

14569..15927
DNA (1359bp) protein (453aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein n=3 Tax=Anaeromyxobacter RepID=B4UKZ1_ANASK (db=UNIREF evalue=7.0e-126 bit_score=454.0 identity=49.56 coverage=95.8057395143488)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=294 to=305 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD58_15_19

Not on your lists

16115..16273
DNA (159bp) protein (53aa)
16115..16273 + (rbs_motif=AGxAGG/AGGxGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD56509.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_20

Not on your lists

16291..16611
DNA (321bp) protein (107aa)
coiled-coil (db=Coil db_id=coil from=49 to=70 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD56510.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_21

Not on your lists

17040..17540
DNA (501bp) protein (167aa)
hypothetical protein
hypothetical protein alias= id=86455 tax=ACD58 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=ACD58 organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56511.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_22

Not on your lists

17580..18053
DNA (474bp) protein (158aa)
seg (db=Seg db_id=seg from=17 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
ACD58_15_23

Not on your lists

18392..18967
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZI3_9BACE (db=UNIREF evalue=3.0e-21 bit_score=104.0 identity=35.26 coverage=88.0208333333333)
cell wall hydrolase/autolysin
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=2 to=175 evalue=2.3e-36)
no description (db=Gene3D db_id=G3DSA:3.40.630.40 from=1 to=173 evalue=2.8e-34 interpro_id=IPR002508 interpro_description=Cell wall hydrolase/autolysin, catalytic GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
ACD58_15_24

Not on your lists

18971..19615
DNA (645bp) protein (215aa)
Peptidase_C39 (db=HMMPfam db_id=PF03412 from=9 to=71 evalue=7.7e-11 interpro_id=IPR005074 interpro_description=Peptidase C39, bacteriocin processing GO=Molecular Function: ATP binding (GO:0005524), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: integral to membrane (GO:0016021))
Uncharacterized protein {ECO:0000313|EMBL:EKD56494.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_25

Not on your lists

19717..19995
DNA (279bp) protein (93aa)
seg (db=Seg db_id=seg from=66 to=78)
Uncharacterized protein {ECO:0000313|EMBL:EKD56495.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_15_26

Not on your lists

comp(20313..22121)
DNA (1809bp) protein (603aa)
ftsH; cell division protein FtsH
ftsH; cell division protein FtsH
ATP-dependent metalloprotease FtsH n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGB2_THET1 (db=UNIREF evalue=7.0e-167 bit_score=591.0 identity=53.25 coverage=91.044776119403)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
ACD58_15_27

Not on your lists

comp(22364..22588)
DNA (225bp) protein (75aa)
22364..22588 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD56497.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 27 items

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