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ACD58_28

Alias: ACD58_20767.23547.10

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD58_28_1

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107..1006
DNA (900bp) protein (300aa)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUK6_9AQUI (db=UNIREF evalue=2.0e-63 bit_score=245.0 identity=44.26 coverage=95.6666666666667)
Ribosomal RNA small subunit methyltransferase H
S-adenosyl-L-methionine dependent methyltransferase, MraW type (db=HMMPIR db_id=PIRSF004486 from=1 to=299 evalue=2.8e-109 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
TIGR00006: S-adenosyl-methyltransferase Mra (db=HMMTigr db_id=TIGR00006 from=2 to=299 evalue=1.8e-102 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
ACD58_28_2

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1011..1358
DNA (348bp) protein (116aa)
coiled-coil (db=Coil db_id=coil from=58 to=86 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
seg (db=Seg db_id=seg from=38 to=46)
Uncharacterized protein {ECO:0000313|EMBL:EKD56788.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_3

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1360..3096
DNA (1737bp) protein (579aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5A9_SPHTD (db=UNIREF evalue=6.0e-95 bit_score=352.0 identity=38.59 coverage=91.3644214162349)
seg (db=Seg db_id=seg from=176 to=190)
ACD58_28_4

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3297..4400
DNA (1104bp) protein (368aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Mobiluncus mulieris RepID=D0YVE9_9ACTO (db=UNIREF evalue=2.0e-37 bit_score=160.0 identity=31.33 coverage=89.945652173913)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC:6.3.2.10)
seg (db=Seg db_id=seg from=11 to=21)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE--D-ALANYL-D- ALANYL LIGASE (db=HMMPanther db_id=PTHR23135:SF3 from=31 to=360 evalue=2.3e-49 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activ
ACD58_28_5

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4479..5522
DNA (1044bp) protein (348aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=323 to=345)
seg (db=Seg db_id=seg from=194 to=202)
seg (db=Seg db_id=seg from=270 to=290)
ACD58_28_6

Not on your lists

5629..7149
DNA (1521bp) protein (507aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase
seg (db=Seg db_id=seg from=117 to=131)
murD: UDP-N-acetylmuramoylalanine--D-glutama (db=HMMTigr db_id=TIGR01087 from=10 to=505 evalue=2.7e-103 interpro_id=IPR005762 interpro_description=UDP-N-acetylmuramoylalanine-D-glutamate ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biologi
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (db=HMMPanther db_id=PTHR23135:SF2 from=121 to=506 evalue=3.4e-83)
ACD58_28_7

Not on your lists

7290..8408
DNA (1119bp) protein (373aa)
stage V sporulation protein E
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=69)
seg (db=Seg db_id=seg from=238 to=255)
ACD58_28_8

Not on your lists

8431..9627
DNA (1197bp) protein (399aa)
hypothetical protein
UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M199_9FIRM (db=UNIREF evalue=2.0e-60 bit_score=236.0 identity=38.46 coverage=82.7067669172932)
seg (db=Seg db_id=seg from=90 to=100)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=12 to=398 evalue=4.6e-86)
ACD58_28_9

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9704..9898
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=44 to=55)
seg (db=Seg db_id=seg from=14 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD56795.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_10

Not on your lists

10023..10352
DNA (330bp) protein (110aa)
seg (db=Seg db_id=seg from=92 to=104)
Uncharacterized protein {ECO:0000313|EMBL:EKD56796.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_11

Not on your lists

10419..11090
DNA (672bp) protein (224aa)
coiled-coil (db=Coil db_id=coil from=56 to=77 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD56797.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_12

Not on your lists

11099..12607
DNA (1509bp) protein (503aa)
murC; UDP-N-acetylmuramate--L-alanine ligase
murC: UDP-N-acetylmuramate--alanine ligase (db=HMMTigr db_id=TIGR01082 from=2 to=501 evalue=5.4e-103 interpro_id=IPR005758 interpro_description=UDP-N-acetylmuramate-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: peptidogly
UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE (db=HMMPanther db_id=PTHR23135:SF5 from=114 to=481 evalue=3.1e-78)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=114 to=481 evalue=3.1e-78)
ACD58_28_13

Not on your lists

comp(12627..13097)
DNA (471bp) protein (157aa)
seg (db=Seg db_id=seg from=135 to=146)
seg (db=Seg db_id=seg from=59 to=72)
seg (db=Seg db_id=seg from=9 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKD56799.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_14

Not on your lists

comp(13174..14193)
DNA (1020bp) protein (340aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=225 to=246 evalue=NA)
DUF2419 (db=HMMPfam db_id=PF10343 from=67 to=260 evalue=6.4e-05 interpro_id=IPR019438 interpro_description=Protein of unknown function DUF2419)
hypothetical protein alias= id=86620 tax=ACD58 species=Aeropyrum pernix genus=Aeropyrum taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota organism_group=ACD58 organism_desc=ACD58
ACD58_28_15

Not on your lists

comp(14285..14920)
DNA (636bp) protein (212aa)
isopentenyldiphosphate isomerase
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=1 to=198 evalue=2.3e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=4 to=203 evalue=5.8e-22 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
DIPEPTIDYL PEPTIDASE III-RELATED (db=HMMPanther db_id=PTHR23422 from=7 to=100 evalue=1.1e-14)
ACD58_28_16

Not on your lists

comp(14930..16198)
DNA (1269bp) protein (423aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=388 to=405)
seg (db=Seg db_id=seg from=96 to=102)
seg (db=Seg db_id=seg from=300 to=312)
seg (db=Seg db_id=seg from=321 to=334)
ACD58_28_17

Not on your lists

comp(16195..16797)
DNA (603bp) protein (201aa)
metal dependent phosphohydrolase
HD (db=HMMPfam db_id=PF01966 from=20 to=134 evalue=2.0e-09 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=19 to=163 evalue=3.1e-07)
HDIG: uncharacterized domain HDIG (db=HMMTigr db_id=TIGR00277 from=15 to=92 evalue=0.0013 interpro_id=IPR006675 interpro_description=Uncharacterised protein family HDIG)
ACD58_28_18

Not on your lists

comp(16995..17486)
DNA (492bp) protein (164aa)
asparaginase
Glutaminase/Asparaginase (db=superfamily db_id=SSF53774 from=2 to=159 evalue=7.2e-30 interpro_id=IPR006034 interpro_description=Asparaginase/glutaminase GO=Biological Process: cellular amino acid metabolic process (GO:0006520))
no description (db=Gene3D db_id=G3DSA:3.40.50.1170 from=2 to=159 evalue=6.1e-24)
Asparaginase (db=HMMPfam db_id=PF00710 from=2 to=156 evalue=4.0e-21 interpro_id=IPR006034 interpro_description=Asparaginase/glutaminase GO=Biological Process: cellular amino acid metabolic process (GO:0006520))
ACD58_28_19

Not on your lists

comp(17587..18195)
DNA (609bp) protein (203aa)
asparaginase
Asparaginase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y7G2_9GAMM (db=UNIREF evalue=2.0e-16 bit_score=89.0 identity=34.97 coverage=68.4729064039409)
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
seg (db=Seg db_id=seg from=97 to=113)
ACD58_28_20

Not on your lists

18224..19156
DNA (933bp) protein (311aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
seg (db=Seg db_id=seg from=219 to=230)
murB: UDP-N-acetylenolpyruvoylglucosamine re (db=HMMTigr db_id=TIGR00179 from=7 to=307 evalue=2.4e-64 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: oxidation reduction (GO:0055114))
UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE (db=HMMPanther db_id=PTHR21071 from=1 to=310 evalue=7.5e-49 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: oxidation reduction (GO:0055114))
ACD58_28_21

Not on your lists

19245..20039
DNA (795bp) protein (265aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
seg (db=Seg db_id=seg from=5 to=14)
coiled-coil (db=Coil db_id=coil from=235 to=256 evalue=NA)
POTRA_1 (db=HMMPfam db_id=PF08478 from=57 to=121 evalue=8.6e-05 interpro_id=IPR013685 interpro_description=Polypeptide-transport-associated, FtsQ-type)
ACD58_28_22

Not on your lists

20150..20488
DNA (339bp) protein (113aa)
hypothetical protein
hypothetical protein alias= id=86624 tax=ACD58 species=Kordia algicida genus=Kordia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=ACD58 organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56782.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_23

Not on your lists

20580..22277
DNA (1698bp) protein (566aa)
exonuclease RecJ (EC:3.1.-.-)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Thermoanaerobacter RepID=B0K0M9_THEPX (db=UNIREF evalue=9.0e-95 bit_score=351.0 identity=40.35 coverage=97.7031802120141)
seg (db=Seg db_id=seg from=394 to=406)
ACD58_28_24

Not on your lists

22300..22470
DNA (171bp) protein (57aa)
22300..22470 + (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD56784.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_25

Not on your lists

22743..23006
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
Uncharacterized protein {ECO:0000313|EMBL:EKD56785.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_28_26

Not on your lists

23240..23533
DNA (294bp) protein (98aa)
excinuclease ABC subunit C
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=4 to=92 evalue=7.9e-17 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=6 to=75 evalue=9.1e-08 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Uncharacterized protein {ECO:0000313|EMBL:EKD56786.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 26 items

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