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ACD5_20

Alias: ACD5_35631.18193.11

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_20_1

Not on your lists

comp(1..1290)
DNA (1290bp) protein (430aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (Fragment) n=1 Tax=Heliobacillus mobilis RepID=Q8GE10_HELMO (db=UNIREF evalue=5.0e-64 bit_score=248.0 identity=36.92 coverage=96.9767441860465)
seg (db=Seg db_id=seg from=32 to=50)
seg (db=Seg db_id=seg from=91 to=102)
ACD5_20_2

Not on your lists

comp(1399..2436)
DNA (1038bp) protein (346aa)
methicillin resistance protein
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=101 to=316 evalue=6.8e-37 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=139 to=333 evalue=7.7e-34 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
FemAB (db=HMMPfam db_id=PF02388 from=228 to=334 evalue=1.5e-26 interpro_id=IPR003447 interpro_description=Methicillin resistance protein GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD5_20_3

Not on your lists

comp(2557..3219)
DNA (663bp) protein (221aa)
hypothetical protein
seg (db=Seg db_id=seg from=37 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
hypothetical protein alias=ACD5_C00020G00003,ACD5_35631.18193.11G0003,ACD5_35631.18193.11_3 id=88251 tax=ACD5 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD5_20_4

Not on your lists

comp(3357..3929)
DNA (573bp) protein (191aa)
Holliday junction DNA helicase RuvA
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=188 evalue=9.7e-46 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=63 to=135 evalue=5.3e-21 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=66 to=157 evalue=6.3e-21)
ACD5_20_5

Not on your lists

comp(3942..6326)
DNA (2385bp) protein (795aa)
hypothetical protein
hypothetical protein
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UUN3_ROSS1 (db=UNIREF evalue=3.0e-120 bit_score=436.0 identity=41.8 coverage=73.7106918238994)
seg (db=Seg db_id=seg from=410 to=425)
ACD5_20_6

Not on your lists

comp(6439..7365)
DNA (927bp) protein (309aa)
seg (db=Seg db_id=seg from=174 to=192)
Uncharacterized protein {ECO:0000313|EMBL:EKE25388.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_20_7

Not on your lists

comp(7371..8318)
DNA (948bp) protein (316aa)
seg (db=Seg db_id=seg from=169 to=174)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=114 to=312 evalue=1.7e-20)
RimK (db=HMMPfam db_id=PF08443 from=134 to=289 evalue=5.7e-14 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
ATP_GRASP (db=ProfileScan db_id=PS50975 from=116 to=311 evalue=9.762 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
ACD5_20_8

Not on your lists

comp(8359..9792)
DNA (1434bp) protein (478aa)
alpha-L-glutamate ligase
Alpha-L-glutamate ligase-like protein n=1 Tax=bacterium S5 RepID=D3C0C9_9BACT (db=UNIREF evalue=2.0e-57 bit_score=227.0 identity=42.14 coverage=62.7615062761506)
seg (db=Seg db_id=seg from=326 to=333)
seg (db=Seg db_id=seg from=83 to=94)
? EC 6.3.2.32: syn coenzyme 420-3 (methane path) Jill Banfield (11/15/12)
ACD5_20_9

Not on your lists

comp(9805..10461)
DNA (657bp) protein (219aa)
hypothetical protein
seg (db=Seg db_id=seg from=151 to=164)
seg (db=Seg db_id=seg from=98 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=197)
ACD5_20_10

Not on your lists

comp(10630..11166)
DNA (537bp) protein (179aa)
Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Fusobacterium RepID=D6LEI2_9FUSO (db=UNIREF evalue=2.0e-43 bit_score=177.0 identity=56.49 coverage=85.4748603351955)
crossover junction endodeoxyribonuclease RuvC
RUVC (db=PatternScan db_id=PS01321 from=128 to=163 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site)
RuvC (db=HMMPfam db_id=PF02075 from=18 to=166 evalue=3.8e-51 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
ACD5_20_11

Not on your lists

comp(11282..11998)
DNA (717bp) protein (239aa)
yeeN
seg (db=Seg db_id=seg from=152 to=163)
seg (db=Seg db_id=seg from=82 to=92)
coiled-coil (db=Coil db_id=coil from=181 to=202 evalue=NA)
ACD5_20_12

Not on your lists

comp(12131..12880)
DNA (750bp) protein (250aa)
transcriptional regulator TrmB
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=1.0e-22 bit_score=110.0 identity=38.69 coverage=54.4)
seg (db=Seg db_id=seg from=155 to=169)
seg (db=Seg db_id=seg from=215 to=228)
ACD5_20_13

Not on your lists

13130..13324
DNA (195bp) protein (65aa)
13130..13324 + (rbs_motif=AAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25395.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_20_14

Not on your lists

13922..14203
DNA (282bp) protein (94aa)
13922..14203 + (rbs_motif=AAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25396.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_20_15

Not on your lists

comp(14166..16151)
DNA (1986bp) protein (662aa)
seg (db=Seg db_id=seg from=376 to=385)
coiled-coil (db=Coil db_id=coil from=574 to=595 evalue=NA)
Lamin A/C globular tail domain (db=superfamily db_id=SSF74853 from=189 to=300 evalue=1.8e-06)
Lamin A/C globular tail domain (db=superfamily db_id=SSF74853 from=425 to=515 evalue=8.4e-05)
ACD5_20_16

Not on your lists

comp(16298..16876)
DNA (579bp) protein (193aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
seg (db=Seg db_id=seg from=34 to=48)
ACD5_20_17

Not on your lists

comp(16890..17114)
DNA (225bp) protein (75aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
Uncharacterized protein {ECO:0000313|EMBL:EKE25386.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_20_18

Not on your lists

comp(17268..17906)
DNA (639bp) protein (213aa)
Holliday junction DNA helicase RuvB
HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED (db=HMMPanther db_id=PTHR13779 from=1 to=208 evalue=2.5e-103)
HOLLIDAY JUNCTION DNA HELICASE RUVB (db=HMMPanther db_id=PTHR13779:SF2 from=1 to=208 evalue=2.5e-103)
RuvB_N (db=HMMPfam db_id=PF05496 from=1 to=109 evalue=9.7e-48 interpro_id=IPR008824 interpro_description=DNA helicase, Holliday junction RuvB type, N-terminal GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
Displaying 18 items

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