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ACD5_158

Alias: ACD5_43623.3330.9

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_158_1
GWC1_OD1_38_22, Parcubacteria, Bacteria

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comp(3..116)
DNA (114bp) protein (38aa)
50S RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691:SF5 from=1 to=38 evalue=4.9e-13 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=1 to=38 evalue=4.9e-13 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L2_C (db=HMMPfam db_id=PF03947 from=1 to=38 evalue=2.4e-11 interpro_id=IPR022669 interpro_description=Ribosomal protein L2, C-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=1 to=38 evalue=7.9e-09 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
ACD5_158_2

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comp(708..1103)
DNA (396bp) protein (132aa)
50S ribosomal protein L23
seg (db=Seg db_id=seg from=5 to=35)
RIBOSOMAL_L23 (db=PatternScan db_id=PS00050 from=113 to=128 evalue=0.0 interpro_id=IPR001014 interpro_description=Ribosomal protein L23/L25, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=37 to=130 evalue=3.0e-24 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD5_158_3

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comp(1140..1769)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGB3_9FIRM (db=UNIREF evalue=5.0e-39 bit_score=164.0 identity=37.5 coverage=98.5714285714286)
rplD; 50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=207 evalue=4.8e-59 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=18 to=206 evalue=6.4e-55 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_158_4

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comp(1825..2388)
DNA (564bp) protein (188aa)
50S ribosomal protein L3
seg (db=Seg db_id=seg from=139 to=151)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=5 to=186 evalue=1.5e-63 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=186 evalue=1.3e-54)
ACD5_158_5

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comp(2586..2918)
DNA (333bp) protein (111aa)
30S ribosomal protein S10
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=37 to=52 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=12 to=110 evalue=2.4e-56 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=13 to=110 evalue=3.6e-49 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_158_6
GWD2_OD1_38_11, Parcubacteria, Bacteria

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comp(3015..3368)
DNA (354bp) protein (118aa)
tuf; elongation factor Tu (EC:3.6.5.3)
no description (db=Gene3D db_id=G3DSA:2.40.30.10 from=23 to=117 evalue=2.5e-39)
GTP_EFTU_D3 (db=HMMPfam db_id=PF03143 from=21 to=116 evalue=1.0e-36 interpro_id=IPR004160 interpro_description=Translation elongation factor EFTu/EF1A, C-terminal GO=Molecular Function: GTP binding (GO:0005525))
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain (db=superfamily db_id=SSF50465 from=21 to=117 evalue=5.3e-35 interpro_id=IPR009001 interpro_description=Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)
Displaying 6 items

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