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ACD60_19

Alias: ACD60_14857.83743.12

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Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_19_1

Not on your lists

1..666
DNA (666bp) protein (222aa)
Hadh; 3-hydroxyacyl-CoA dehydrogenase (short-chain)
seg (db=Seg db_id=seg from=6 to=20)
ADH_SHORT (db=PatternScan db_id=PS00061 from=114 to=142 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
3-HYDROXYACYL-COA DEHYDROGENASE TYPE II (db=HMMPanther db_id=PTHR19410:SF78 from=1 to=214 evalue=7.0e-88)
ACD60_19_2

Not on your lists

732..2681
DNA (1950bp) protein (650aa)
Putative membrane protein n=1 Tax=Rickettsiella grylli RepID=A8PN24_9COXI (db=UNIREF evalue=0.0 bit_score=776.0 identity=63.29 coverage=99.6923076923077)
amino acid permease family protein
amino acid permease family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=291 to=313)
ACD60_19_3

Not on your lists

comp(2687..4330)
DNA (1644bp) protein (548aa)
peptidase M50
transmembrane_regions (db=TMHMM db_id=tmhmm from=517 to=539)
transmembrane_regions (db=TMHMM db_id=tmhmm from=417 to=434)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
ACD60_19_4

Not on your lists

4387..4569
DNA (183bp) protein (61aa)
4387..4569 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54914.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_5
R_Gammaproteobacteria_37_34, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4606..5835
DNA (1230bp) protein (410aa)
Acetyl-CoA acetyltransferase n=4 Tax=Rhodopseudomonas palustris RepID=B3QFI7_RHOPT (db=UNIREF evalue=4.0e-142 bit_score=508.0 identity=60.69 coverage=95.3658536585366)
acetyl-CoA acetyltransferase
acetyl-CoA acetyltransferase
seg (db=Seg db_id=seg from=269 to=283)
ACD60_19_6

Not on your lists

5832..7430
DNA (1599bp) protein (533aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase n=6 Tax=Coxiella burnetii RepID=A9KE62_COXBN (db=UNIREF evalue=0.0 bit_score=710.0 identity=62.98 coverage=99.624765478424)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR10617:SF1 from=6 to=532 evalue=2.4e-248)
ACD60_19_7

Not on your lists

comp(7494..7913)
DNA (420bp) protein (140aa)
hypothetical protein
seg (db=Seg db_id=seg from=73 to=84)
DUF1284 (db=HMMPfam db_id=PF06935 from=19 to=122 evalue=2.5e-28 interpro_id=IPR009702 interpro_description=Protein of unknown function DUF1284)
Uncharacterized protein {ECO:0000313|EMBL:EKD54902.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_8

Not on your lists

comp(7910..8479)
DNA (570bp) protein (190aa)
BioY protein
BioY protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIK6_THET1 (db=UNIREF evalue=3.0e-21 bit_score=104.0 identity=46.0 coverage=77.3684210526316)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=160 to=182)
ACD60_19_9

Not on your lists

comp(8569..9111)
DNA (543bp) protein (181aa)
ribosomal subunit interface protein
Ribosome binding protein Y (YfiA homologue) (db=superfamily db_id=SSF69754 from=3 to=121 evalue=6.9e-19 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
Ribosomal_S30AE (db=HMMPfam db_id=PF02482 from=4 to=101 evalue=9.0e-13 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=103 to=176 evalue=1.8e-11 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD60_19_10

Not on your lists

comp(9294..10076)
DNA (783bp) protein (261aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Legionella longbeachae RepID=D3HQD0_LEGLN (db=UNIREF evalue=1.0e-60 bit_score=236.0 identity=46.15 coverage=98.4674329501916)
seg (db=Seg db_id=seg from=75 to=86)
DUF2063 (db=HMMPfam db_id=PF09836 from=7 to=99 evalue=2.8e-20 interpro_id=IPR018640 interpro_description=Protein of unknown function DUF2063)
ACD60_19_11

Not on your lists

comp(10073..10918)
DNA (846bp) protein (282aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Legionella longbeachae RepID=D3HQC9_LEGLN (db=UNIREF evalue=3.0e-106 bit_score=388.0 identity=68.98 coverage=96.8085106382979)
seg (db=Seg db_id=seg from=217 to=229)
ACD60_19_12

Not on your lists

comp(10994..11257)
DNA (264bp) protein (88aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7X8_HAHCH (db=UNIREF evalue=3.0e-11 bit_score=70.9 identity=53.01 coverage=92.0454545454545)
seg (db=Seg db_id=seg from=11 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD60_19_13

Not on your lists

comp(11434..12345)
DNA (912bp) protein (304aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=127)
seg (db=Seg db_id=seg from=220 to=224)
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=268)
ACD60_19_14

Not on your lists

comp(12362..13753)
DNA (1392bp) protein (464aa)
MATE efflux family protein rbh
MATE efflux family protein rbh
MATE efflux family protein n=2 Tax=Legionella longbeachae RepID=D3HS50_LEGLN (db=UNIREF evalue=2.0e-127 bit_score=459.0 identity=53.32 coverage=96.7672413793103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=163 to=183)
ACD60_19_15

Not on your lists

comp(13787..15943)
DNA (2157bp) protein (719aa)
carbonate dehydratase (EC:4.2.1.1)
Sulfate permease n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08Y26_STIAU (db=UNIREF evalue=8.0e-149 bit_score=531.0 identity=45.16 coverage=97.4965229485396)
seg (db=Seg db_id=seg from=665 to=676)
seg (db=Seg db_id=seg from=284 to=298)
ACD60_19_16

Not on your lists

16268..17452
DNA (1185bp) protein (395aa)
putative CPA2 family transporter
putative CPA2 family transporter
Probable sodium/proton antiporter n=6 Tax=Pseudomonas aeruginosa RepID=B7V766_PSEA8 (db=UNIREF evalue=3.0e-139 bit_score=498.0 identity=66.75 coverage=99.4936708860759)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=137)
ACD60_19_17

Not on your lists

17589..19235
DNA (1647bp) protein (549aa)
DUF218 (db=HMMPfam db_id=PF02698 from=226 to=284 evalue=5.1e-09 interpro_id=IPR003848 interpro_description=Protein of unknown function DUF218)
Uncharacterized protein {ECO:0000313|EMBL:EKD54890.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_18

Not on your lists

comp(19291..20433)
DNA (1143bp) protein (381aa)
cardiolipin synthetase
cardiolipin synthetase
Cardiolipin synthetase n=6 Tax=Coxiella burnetii RepID=A9KGT3_COXBN (db=UNIREF evalue=1.0e-97 bit_score=360.0 identity=48.5 coverage=95.5380577427822)
seg (db=Seg db_id=seg from=211 to=224)
ACD60_19_19

Not on your lists

20513..21466
DNA (954bp) protein (318aa)
hypothetical protein
seg (db=Seg db_id=seg from=147 to=161)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=61 to=317 evalue=1.5e-34)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=110 to=279 evalue=3.1e-07)
ACD60_19_20

Not on your lists

comp(21477..21782)
DNA (306bp) protein (102aa)
Conserved hypothethical protein
seg (db=Seg db_id=seg from=83 to=97)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
Uncharacterized protein {ECO:0000313|EMBL:EKD54893.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_21

Not on your lists

comp(21797..23254)
DNA (1458bp) protein (486aa)
lysP; Lysine-specific permease
lysP; Lysine-specific permease
Lysine-specific permease n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N5W4_9GAMM (db=UNIREF evalue=3.0e-152 bit_score=541.0 identity=64.41 coverage=96.9135802469136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=163 to=185)
ACD60_19_22

Not on your lists

comp(23251..24045)
DNA (795bp) protein (265aa)
Transmembrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=105)
seg (db=Seg db_id=seg from=4 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
ACD60_19_23

Not on your lists

comp(24144..25079)
DNA (936bp) protein (312aa)
rdgC; recombination-associated protein rdgc
RdgC (db=HMMPfam db_id=PF04381 from=1 to=296 evalue=1.0e-85 interpro_id=IPR007476 interpro_description=Putative exonuclease, RdgC GO=Biological Process: DNA recombination (GO:0006310))
Recombination associated protein {ECO:0000313|EMBL:EKD54896.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Recombination-associated protein RdgC n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SVE3_META2
ACD60_19_24

Not on your lists

comp(25069..26721)
DNA (1653bp) protein (551aa)
Zinc metalloproteinase (EC:3.4.24.-)
Zinc metalloproteinase (EC:3.4.24.-)
Zinc metalloproteinase mspA n=3 Tax=Legionella longbeachae RepID=MSPA_LEGLO (db=UNIREF evalue=4.0e-98 bit_score=362.0 identity=40.93 coverage=94.1923774954628)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
ACD60_19_25

Not on your lists

comp(26801..27493)
DNA (693bp) protein (231aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
ACD60_19_26

Not on your lists

comp(27596..28663)
DNA (1068bp) protein (356aa)
magnesium transporter
magnesium transporter
Magnesium transport protein n=1 Tax=uncultured archaeon RepID=D1JFF2_9ARCH (db=UNIREF evalue=3.0e-84 bit_score=315.0 identity=47.01 coverage=98.0337078651685)
seg (db=Seg db_id=seg from=297 to=312)
ACD60_19_27

Not on your lists

comp(28738..29061)
DNA (324bp) protein (108aa)
17 kDa surface antigen n=1 Tax=Beggiatoa sp. PS RepID=A7BZZ6_9GAMM (db=UNIREF evalue=2.0e-14 bit_score=81.3 identity=43.69 coverage=92.5925925925926)
hypothetical protein (db=KEGG evalue=1.0e-11 bit_score=71.6 identity=42.35 coverage=75.9259259259259)
seg (db=Seg db_id=seg from=4 to=15)
17 kDa surface antigen {ECO:0000313|EMBL:EKD54900.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_28

Not on your lists

comp(29412..29648)
DNA (237bp) protein (79aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=5 to=20)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD54882.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_19_29

Not on your lists

comp(29682..30080)
DNA (399bp) protein (133aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=73 to=86)
seg (db=Seg db_id=seg from=51 to=70)
seg (db=Seg db_id=seg from=8 to=19)
ACD60_19_30

Not on your lists

30271..30723
DNA (453bp) protein (151aa)
cyclic nucleotide-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=5 to=146 evalue=1.3e-20 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=13 to=146 evalue=1.0e-16 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
Displaying items 1-30 of 77 in total

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