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ACD60_23

Alias: ACD60_39224.46023.19

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_23_1

Not on your lists

133..1095
DNA (963bp) protein (321aa)
133..1095 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54198.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
o-methyltransferase family 3
ACD60_23_2

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comp(1023..2084)
DNA (1062bp) protein (354aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F315_9PROT (db=UNIREF evalue=3.0e-115 bit_score=418.0 identity=53.3 coverage=93.7853107344633)
rmlB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
rmlB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP_gluc_dehyt: dTDP-glucose 4,6-deh (db=HMMTigr db_id=TIGR01181 from=6 to=334 evalue=1.2e-179 interpro_id=IPR005888 interpro_description=dTDP-glucose 4,6-dehydratase GO=Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460), Biological Process: nucleotide-sugar metabolic process (GO:0009225))
ACD60_23_3

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comp(2085..2975)
DNA (891bp) protein (297aa)
dTDP-4-dehydrorhamnose reductase
seg (db=Seg db_id=seg from=202 to=213)
rmlD: dTDP-4-dehydrorhamnose reductase (db=HMMTigr db_id=TIGR01214 from=7 to=290 evalue=9.1e-97 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=7 to=290 evalue=1.6e-96 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD60_23_4

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comp(2956..3501)
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B750_THEAS (db=UNIREF evalue=2.0e-54 bit_score=214.0 identity=55.8 coverage=98.3516483516484)
rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase (db=HMMTigr db_id=TIGR01221 from=2 to=175 evalue=9.9e-89 interpro_id=IPR000888 interpro_description=dTDP-4-dehydrorhamnose 3,5-epimerase related GO=Molecular Function: dTDP-4-dehydrorhamnose 3,5-epimerase activity (GO:0008830), Biological Process: lipopolysaccharide biosynthetic process (GO:0009103))
RmlC-like cupins (db=superfamily db_id=SSF51182 from=1 to=178 evalue=3.4e-69 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
ACD60_23_5

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comp(3512..4375)
DNA (864bp) protein (288aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7M4_TOLAT (db=UNIREF evalue=3.0e-105 bit_score=385.0 identity=62.72 coverage=99.3055555555556)
glucose-1-phosphate thymidylyltransferase
glucose-1-phosphate thymidylyltransferase
rmlA: glucose-1-phosphate thymidylyltransfer (db=HMMTigr db_id=TIGR01207 from=2 to=287 evalue=4.6e-153 interpro_id=IPR005907 interpro_description=Glucose-1-phosphate thymidylyltransferase, long form GO=Molecular Function: glucose-1-phosphate thymidylyltransferase activity (GO:0008879), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD60_23_6

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comp(4441..6933)
DNA (2493bp) protein (831aa)
multicopper oxidase (EC:1.10.3.3) rbh
multicopper oxidase (EC:1.10.3.3) rbh
Copper resistance protein n=2 Tax=Legionella longbeachae RepID=D1RE30_LEGLO (db=UNIREF evalue=0.0 bit_score=1094.0 identity=62.17 coverage=97.1119133574007)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
confirmed based on domain Jill Banfield (11/15/12)
ACD60_23_7

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comp(6943..7662)
DNA (720bp) protein (240aa)
Heavy metal transport/detoxification protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=102)
ACD60_23_8

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7736..7960
DNA (225bp) protein (75aa)
putative transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=68 evalue=1.6e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=16 to=64 evalue=5.6e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=9 to=65 evalue=0.00062 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD60_23_9

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comp(8129..8353)
DNA (225bp) protein (75aa)
seg (db=Seg db_id=seg from=8 to=28)
seg (db=Seg db_id=seg from=31 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=47)
Uncharacterized protein {ECO:0000313|EMBL:EKD54195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_10

Not on your lists

comp(8358..8555)
DNA (198bp) protein (66aa)
8358..8555 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54196.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_11

Not on your lists

8707..10215
DNA (1509bp) protein (503aa)
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Rickettsiella grylli RepID=A8PP32_9COXI (db=UNIREF evalue=1.0e-76 bit_score=291.0 identity=38.38 coverage=88.4691848906561)
dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (EC:3.4.16.4)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
PBP4: D-alanyl-D-alanine carboxypeptidase/D- (db=HMMTigr db_id=TIGR00666 from=79 to=476 evalue=4.3e-90 interpro_id=IPR000667 interpro_description=Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO=Molecular Function: serine-type carboxypeptidase activity (GO:0004185), Biological Process: proteolysis (GO:0006508))
ACD60_23_12

Not on your lists

comp(10456..12078)
DNA (1623bp) protein (541aa)
ubiB; putative ubiquinone biosynthesis protein ubiB
ubiB; putative ubiquinone biosynthesis protein ubiB
Ubiquinone biosynthesis protein n=5 Tax=Legionella pneumophila RepID=D5TBB8_LEGPN (db=UNIREF evalue=2.0e-177 bit_score=626.0 identity=60.25 coverage=89.09426987061)
seg (db=Seg db_id=seg from=502 to=518)
ACD60_23_13

Not on your lists

comp(12075..12686)
DNA (612bp) protein (204aa)
conserved protein of unknown function
Sterol-binding domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RRG4_ALLVD (db=UNIREF evalue=1.0e-26 bit_score=122.0 identity=34.67 coverage=94.6078431372549)
coiled-coil (db=Coil db_id=coil from=168 to=196 evalue=NA)
SCP2 (db=HMMPfam db_id=PF02036 from=9 to=106 evalue=1.4e-09 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
ACD60_23_14

Not on your lists

comp(12686..13432)
DNA (747bp) protein (249aa)
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE n=3 Tax=Aliivibrio RepID=B5FF78_VIBFM (db=UNIREF evalue=9.0e-98 bit_score=359.0 identity=66.94 coverage=99.1967871485944)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
UBIE_1 (db=PatternScan db_id=PS01183 from=33 to=48 evalue=0.0 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
ACD60_23_15

Not on your lists

comp(13432..14622)
DNA (1191bp) protein (397aa)
Tryptophan/tyrosine permease
Tryptophan/tyrosine permease n=1 Tax=Rickettsiella grylli RepID=A8PKR1_9COXI (db=UNIREF evalue=7.0e-82 bit_score=308.0 identity=56.7 coverage=89.6725440806045)
seg (db=Seg db_id=seg from=33 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=312 to=328)
ACD60_23_16

Not on your lists

comp(14747..15208)
DNA (462bp) protein (154aa)
14747..15208 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54184.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_17

Not on your lists

15386..17587
DNA (2202bp) protein (734aa)
seg (db=Seg db_id=seg from=264 to=277)
seg (db=Seg db_id=seg from=362 to=375)
seg (db=Seg db_id=seg from=420 to=431)
Uncharacterized protein {ECO:0000313|EMBL:EKD54185.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_18

Not on your lists

comp(17589..18389)
DNA (801bp) protein (267aa)
Sporulation initiation inhibitor protein Soj n=8 Tax=Legionella RepID=D5TB88_LEGPN (db=UNIREF evalue=2.0e-91 bit_score=339.0 identity=63.35 coverage=93.6329588014981)
conserved protein of unknown function
conserved protein of unknown function
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=253 evalue=5.5e-66)
ACD60_23_19

Not on your lists

comp(18364..19014)
DNA (651bp) protein (217aa)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Idiomarina loihiensis RepID=RSMG_IDILO (db=UNIREF evalue=1.0e-51 bit_score=206.0 identity=50.82 coverage=83.4101382488479)
16S rRNA methyltransferase GidB
gidB: 16S rRNA methyltransferase GidB (db=HMMTigr db_id=TIGR00138 from=24 to=204 evalue=2.0e-73 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=1 to=207 evalue=7.5e-62)
ACD60_23_20

Not on your lists

comp(19011..20882)
DNA (1872bp) protein (624aa)
glucose inhibited division protein A
glucose inhibited division protein A
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG n=1 Tax=Pseudoalteromonas atlantica T6c RepID=MNMG_PSEA6 (db=UNIREF evalue=0.0 bit_score=868.0 identity=70.39 coverage=98.8782051282051)
seg (db=Seg db_id=seg from=14 to=31)
ACD60_23_21

Not on your lists

comp(20954..21094)
DNA (141bp) protein (47aa)
20954..21094 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54189.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_22

Not on your lists

comp(21091..21351)
DNA (261bp) protein (87aa)
PhdYeFM (db=HMMPfam db_id=PF02604 from=5 to=53 evalue=2.4e-12 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
phd_fam: prevent-host-death family protein (db=HMMTigr db_id=TIGR01552 from=6 to=61 evalue=8.4e-07 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
YefM-like (db=superfamily db_id=SSF143120 from=4 to=67 evalue=1.0e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD54190.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_23

Not on your lists

comp(21320..21466)
DNA (147bp) protein (49aa)
21320..21466 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54191.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_24

Not on your lists

comp(21518..21778)
DNA (261bp) protein (87aa)
hypothetical protein
seg (db=Seg db_id=seg from=11 to=22)
DUF2442 (db=HMMPfam db_id=PF10387 from=6 to=81 evalue=1.1e-27 interpro_id=IPR018841 interpro_description=Protein of unknown function DUF2442)
NE0471 N-terminal domain-like (db=superfamily db_id=SSF143880 from=3 to=83 evalue=5.1e-22)
ACD60_23_25

Not on your lists

comp(21829..22044)
DNA (216bp) protein (72aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Synechococcus RepID=Q5N590_SYNP6 (db=UNIREF evalue=3.0e-20 bit_score=100.0 identity=63.01 coverage=95.8333333333333)
Uncharacterized protein {ECO:0000313|EMBL:EKD54193.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_23_26

Not on your lists

comp(22087..23376)
DNA (1290bp) protein (430aa)
trmE; tRNA modification GTPase TrmE
trmE; tRNA modification GTPase TrmE
tRNA modification GTPase mnmE n=30 Tax=Vibrio RepID=MNME_VIBC3 (db=UNIREF evalue=4.0e-132 bit_score=475.0 identity=59.22 coverage=99.5348837209302)
seg (db=Seg db_id=seg from=237 to=249)
ACD60_23_27

Not on your lists

comp(23471..25153)
DNA (1683bp) protein (561aa)
yidC; putative inner membrane protein translocase component YidC
yidC; putative inner membrane protein translocase component YidC
Inner membrane protein oxaA n=6 Tax=Pseudomonas RepID=OXAA_PSEE4 (db=UNIREF evalue=6.0e-149 bit_score=531.0 identity=47.39 coverage=93.7611408199644)
transmembrane_regions (db=TMHMM db_id=tmhmm from=512 to=534)
ACD60_23_28

Not on your lists


comp(25350..25709)
DNA (360bp) protein (120aa)
Ribonuclease P protein component n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BKL8_TERTT (db=UNIREF evalue=2.0e-19 bit_score=98.2 identity=41.96 coverage=91.6666666666667)
rnpA; ribonuclease P (EC:3.1.26.5)
RIBONUCLEASE_P (db=PatternScan db_id=PS00648 from=53 to=67 evalue=0.0 interpro_id=IPR020539 interpro_description=Ribonuclease P, conserved site)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=6 to=109 evalue=4.7e-30 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
ACD60_23_29

Not on your lists

26239..27483
DNA (1245bp) protein (415aa)
Folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C245_9GAMM (db=UNIREF evalue=6.0e-100 bit_score=368.0 identity=45.71 coverage=98.0722891566265)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.12)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.12)
folC: bifunctional protein FolC (db=HMMTigr db_id=TIGR01499 from=25 to=413 evalue=7.5e-105 interpro_id=IPR001645 interpro_description=Folylpolyglutamate synthetase GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD60_23_30

Not on your lists

comp(27473..29518)
DNA (2046bp) protein (682aa)
conserved membrane protein of unknown function
Putative uncharacterized protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1YUC2_BURA4 (db=UNIREF evalue=1.0e-43 bit_score=182.0 identity=31.36 coverage=64.3695014662757)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=288 to=307)
Displaying items 1-30 of 51 in total

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