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ACD60_25

Alias: ACD60_45979.19987.20

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_25_1

Not on your lists

comp(457..1683)
DNA (1227bp) protein (409aa)
xcpS; General secretion pathway protein F
xcpS; General secretion pathway protein F
General secretion pathway protein F n=6 Tax=Legionella pneumophila RepID=D5TCV6_LEGPN (db=UNIREF evalue=7.0e-98 bit_score=361.0 identity=51.81 coverage=91.9315403422983)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=237)
ACD60_25_2

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1843..2757
DNA (915bp) protein (305aa)
seg (db=Seg db_id=seg from=4 to=15)
Uncharacterized protein {ECO:0000313|EMBL:EKD53996.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_25_3

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comp(2760..4238)
DNA (1479bp) protein (493aa)
general secretion pathway protein GspE
general secretion pathway protein GspE
General secretory pathway protein E n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GU42_THISH (db=UNIREF evalue=4.0e-169 bit_score=598.0 identity=63.16 coverage=99.3914807302231)
seg (db=Seg db_id=seg from=366 to=385)
ACD60_25_4

Not on your lists

comp(4238..6217)
DNA (1980bp) protein (660aa)
lspD; type II protein secretion LspD
lspD; type II protein secretion LspD
Type II protein secretion LspD n=6 Tax=Legionella pneumophila RepID=D5TCR2_LEGPN (db=UNIREF evalue=3.0e-115 bit_score=419.0 identity=41.53 coverage=94.6969696969697)
seg (db=Seg db_id=seg from=396 to=413)
ACD60_25_5

Not on your lists

comp(6314..6628)
DNA (315bp) protein (105aa)
hypothetical protein
seg (db=Seg db_id=seg from=91 to=104)
Uncharacterized protein {ECO:0000313|EMBL:EKD53999.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B6R9_METEA
ACD60_25_6

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comp(6637..6960)
DNA (324bp) protein (108aa)
addiction module protein
seg (db=Seg db_id=seg from=26 to=35)
Uncharacterised conserved protein, Gp-49 type (db=HMMPIR db_id=PIRSF028744 from=1 to=106 evalue=3.7e-47 interpro_id=IPR014056 interpro_description=Addiction module killer protein, HI1419)
upstrm_HI1419: probable addiction modul (db=HMMTigr db_id=TIGR02683 from=8 to=101 evalue=3.1e-42 interpro_id=IPR014056 interpro_description=Addiction module killer protein, HI1419)
ACD60_25_7

Not on your lists

comp(6999..8381)
DNA (1383bp) protein (461aa)
exodeoxyribonuclease I
exodeoxyribonuclease I
Exonuclease n=6 Tax=Coxiella burnetii RepID=A9N8N5_COXBR (db=UNIREF evalue=2.0e-109 bit_score=399.0 identity=46.37 coverage=97.3969631236443)
seg (db=Seg db_id=seg from=253 to=264)
ACD60_25_8

Not on your lists

8551..10473
DNA (1923bp) protein (641aa)
asma; AsmA family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=589 to=610 evalue=NA)
seg (db=Seg db_id=seg from=133 to=152)
ACD60_25_9

Not on your lists

10473..11246
DNA (774bp) protein (258aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Beggiatoa sp. PS RepID=A7BW52_9GAMM (db=UNIREF evalue=9.0e-97 bit_score=356.0 identity=63.42 coverage=98.8372093023256)
exodeoxyribonuclease III Xth (EC:4.2.99.18)
exodeoxyribonuclease III Xth (EC:4.2.99.18)
AP_NUCLEASE_F1_1 (db=PatternScan db_id=PS00726 from=29 to=38 evalue=0.0 interpro_id=IPR020847 interpro_description=AP endonuclease, family 1, binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD60_25_10

Not on your lists

11352..11666
DNA (315bp) protein (105aa)
11352..11666 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD54004.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_25_11

Not on your lists

11685..11981
DNA (297bp) protein (99aa)
11685..11981 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54005.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_25_12

Not on your lists

11989..12225
DNA (237bp) protein (79aa)
Oxidoreductase, zinc-binding dehydrogenase family n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZP2_9GAMM (db=UNIREF evalue=9.0e-18 bit_score=92.4 identity=58.44 coverage=96.2025316455696)
qor; Quinone oxidoreductase (NADPH:quinone reductase) (EC:1.6.5.5)
ALCOHOL DEHYDROGENASE, ZINC-CONTAINING (db=HMMPanther db_id=PTHR11695:SF34 from=1 to=76 evalue=1.2e-10)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=1 to=76 evalue=1.2e-10 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-containing GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD60_25_13

Not on your lists

comp(12293..12730)
DNA (438bp) protein (146aa)
12293..12730 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54007.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_25_14

Not on your lists

13072..13725
DNA (654bp) protein (218aa)
putative represor [lambda repressor-like DNA-binding domains]
Uncharacterized HTH-type transcriptional regulator CBU_1416 n=6 Tax=Coxiella burnetii RepID=Y1416_COXBU (db=UNIREF evalue=1.0e-27 bit_score=126.0 identity=34.6 coverage=93.1192660550459)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=120 to=214 evalue=1.2e-10 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=70 evalue=1.1e-09 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD60_25_15

Not on your lists

13736..14281
DNA (546bp) protein (182aa)
13736..14281 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54009.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_25_16

Not on your lists

14295..15041
DNA (747bp) protein (249aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
ACD60_25_17

Not on your lists

15060..16520
DNA (1461bp) protein (487aa)
Putative uncharacterized protein h16_B1129 n=1 Tax=Ralstonia eutropha H16 RepID=Q0K254_RALEH (db=UNIREF evalue=2.0e-102 bit_score=377.0 identity=40.33 coverage=98.5626283367556)
hypothetical protein
hypothetical protein
Microcystin LR degradation protein MlrC (db=HMMPIR db_id=PIRSF012702 from=1 to=486 evalue=1.6e-138 interpro_id=IPR009197 interpro_description=Microcystin LR degradation protein MlrC)
ACD60_25_18

Not on your lists

comp(16517..17626)
DNA (1110bp) protein (370aa)
hypothetical protein
hypothetical protein
ThiF/MoeB/HesA family protein n=2 Tax=Legionella RepID=D3HLN5_LEGLN (db=UNIREF evalue=3.0e-92 bit_score=342.0 identity=49.31 coverage=97.027027027027)
seg (db=Seg db_id=seg from=127 to=143)
ACD60_25_19

Not on your lists


comp(17877..18590)
DNA (714bp) protein (238aa)
Ribonuclease PH n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSL9_9BACT (db=UNIREF evalue=9.0e-105 bit_score=382.0 identity=77.25 coverage=97.4789915966387)
rph; ribonuclease PH (EC:2.7.7.56)
rph; ribonuclease PH (EC:2.7.7.56)
RIBONUCLEASE_PH (db=PatternScan db_id=PS01277 from=116 to=129 evalue=0.0 interpro_id=IPR018336 interpro_description=Ribonuclease PH, conserved site)
ACD60_25_20

Not on your lists

18683..19549
DNA (867bp) protein (289aa)
hypothetical protein
seg (db=Seg db_id=seg from=7 to=20)
coiled-coil (db=Coil db_id=coil from=117 to=153 evalue=NA)
TIGR00255: conserved hypothetical protein T (db=HMMTigr db_id=TIGR00255 from=1 to=288 evalue=1.1e-114 interpro_id=IPR005229 interpro_description=Conserved hypothetical protein CHP00255)
ACD60_25_21

Not on your lists

comp(19555..20019)
DNA (465bp) protein (155aa)
hypothetical protein (db=KEGG evalue=7.0e-13 bit_score=75.9 identity=33.06 coverage=72.258064516129)
Cyclin (db=HMMPfam db_id=PF08613 from=21 to=77 evalue=1.4e-16 interpro_id=IPR013922 interpro_description=Cyclin-related 2)
Cyclin-dependent kinase {ECO:0000313|EMBL:EKD54015.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_9 n=1 Tax=Blastocystis hominis RepID=D8MBW0_BLAHO
Displaying 21 items

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