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ACD60_26

Alias: ACD60_6122.36102.19

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_26_1

Not on your lists

comp(89..949)
DNA (861bp) protein (287aa)
RNA polymerase sigma factor RpoH
RNA polymerase sigma factor RpoH
RNA polymerase sigma factor n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U743_MARAV (db=UNIREF evalue=3.0e-97 bit_score=358.0 identity=63.08 coverage=96.8641114982578)
coiled-coil (db=Coil db_id=coil from=254 to=275 evalue=NA)
ACD60_26_2

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1204..1476
DNA (273bp) protein (91aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5I7_ALHEH (db=UNIREF evalue=2.0e-18 bit_score=94.7 identity=47.78 coverage=97.8021978021978)
RelE-like (db=superfamily db_id=SSF143011 from=2 to=86 evalue=1.7e-12)
RelE_StbE: addiction module toxin, RelE/Stb (db=HMMTigr db_id=TIGR02385 from=3 to=90 evalue=0.00052 interpro_id=IPR012753 interpro_description=Addiction module toxin, RelE/StbE)
ACD60_26_3

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1488..1754
DNA (267bp) protein (89aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BIR5_9BACT (db=UNIREF evalue=2.0e-17 bit_score=91.3 identity=54.43 coverage=87.6404494382023)
Cro/Cl family transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=9 to=83 evalue=3.3e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=22 to=77 evalue=1.1e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD60_26_4

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comp(1869..2867)
DNA (999bp) protein (333aa)
Signal recognition particle-docking protein FtsY n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N400_9GAMM (db=UNIREF evalue=1.0e-118 bit_score=429.0 identity=66.56 coverage=91.2912912912913)
signal recognition particle-docking protein FtsY
signal recognition particle-docking protein FtsY
coiled-coil (db=Coil db_id=coil from=83 to=104 evalue=NA)
ACD60_26_5

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2916..3476
DNA (561bp) protein (187aa)
Methyltransferase n=3 Tax=Pectobacterium RepID=C6DGS3_PECCP (db=UNIREF evalue=3.0e-51 bit_score=204.0 identity=54.14 coverage=96.2566844919786)
rsmD; 16S rRNA methyltransferase
N6_MTASE (db=PatternScan db_id=PS00092 from=118 to=124 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
Predicted methylase, YhhF type (db=HMMPIR db_id=PIRSF004553 from=1 to=185 evalue=2.4e-58 interpro_id=IPR004398 interpro_description=Conserved hypothetical protein CHP00095)
ACD60_26_6

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3487..4554
DNA (1068bp) protein (356aa)
Tryptophanyl-tRNA synthetase n=1 Tax=Rickettsiella grylli RepID=A8PKW1_9COXI (db=UNIREF evalue=5.0e-152 bit_score=540.0 identity=70.74 coverage=98.5955056179775)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
trpS: tryptophan--tRNA ligase (db=HMMTigr db_id=TIGR00233 from=5 to=353 evalue=4.5e-86 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
ACD60_26_7

Not on your lists

4602..4940
DNA (339bp) protein (113aa)
coiled-coil (db=Coil db_id=coil from=60 to=81 evalue=NA)
seg (db=Seg db_id=seg from=63 to=73)
Uncharacterized protein {ECO:0000313|EMBL:EKD53943.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_8

Not on your lists

4937..5068
DNA (132bp) protein (44aa)
seg (db=Seg db_id=seg from=26 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKD53944.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_9

Not on your lists

comp(5081..5539)
DNA (459bp) protein (153aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=50 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD60_26_10

Not on your lists

comp(5565..6152)
DNA (588bp) protein (196aa)
marC family integral membrane protein
MarC family integral membrane protein n=6 Tax=Coxiella burnetii RepID=A9KCZ2_COXBN (db=UNIREF evalue=9.0e-43 bit_score=176.0 identity=59.49 coverage=98.469387755102)
seg (db=Seg db_id=seg from=47 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=189)
ACD60_26_11

Not on your lists

6496..7569
DNA (1074bp) protein (358aa)
6496..7569 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD53947.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_12

Not on your lists

comp(7639..8787)
DNA (1149bp) protein (383aa)
Nitric oxide reductase n=1 Tax=Beggiatoa sp. PS RepID=A7BR24_9GAMM (db=UNIREF evalue=9.0e-107 bit_score=390.0 identity=51.19 coverage=97.911227154047)
rubB; rubredoxin reductase (EC:1.18.1.-)
rubB; rubredoxin reductase (EC:1.18.1.-)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=6 to=321 evalue=5.0e-55)
ACD60_26_13

Not on your lists

8816..9349
DNA (534bp) protein (178aa)
ubiC; chorismate--pyruvate lyase (EC:4.1.3.-)
Chorismate lyase-like (db=superfamily db_id=SSF64288 from=1 to=177 evalue=3.3e-34)
no description (db=Gene3D db_id=G3DSA:3.40.1410.10 from=3 to=177 evalue=1.8e-33)
Chor_lyase (db=HMMPfam db_id=PF04345 from=3 to=172 evalue=1.2e-28 interpro_id=IPR007440 interpro_description=Chorismate--pyruvate lyase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: ubiquinone biosynthetic process (GO:0006744), Molecular Function: chorismate lyase activity (GO:0008813))
ACD60_26_14

Not on your lists

9428..9670
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2C2M4_DICD5 (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=56.34 coverage=86.4197530864197)
hypothetical protein
DUF3423 (db=HMMPfam db_id=PF11903 from=4 to=67 evalue=7.3e-23 interpro_id=IPR021831 interpro_description=Protein of unknown function DUF3423)
Uncharacterized protein {ECO:0000313|EMBL:EKD53950.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_15

Not on your lists

9651..9926
DNA (276bp) protein (92aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=15)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=84 evalue=1.1e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD53951.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_16

Not on your lists

9931..10773
DNA (843bp) protein (281aa)
ubiA; 4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.-)
4-hydroxybenzoate octaprenyltransferase n=6 Tax=Coxiella burnetii RepID=UBIA_COXB1 (db=UNIREF evalue=5.0e-80 bit_score=301.0 identity=56.12 coverage=98.576512455516)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=279)
ACD60_26_17

Not on your lists

10770..11876
DNA (1107bp) protein (369aa)
pdxB; erythronate-4-phosphate dehydrogenase (EC:1.1.1.-)
Erythronate-4-phosphate dehydrogenase n=7 Tax=Coxiella burnetii RepID=PDXB_COXBN (db=UNIREF evalue=2.0e-65 bit_score=253.0 identity=41.38 coverage=92.1409214092141)
seg (db=Seg db_id=seg from=93 to=104)
2-HYDROXYACID DEHYDROGENASE (db=HMMPanther db_id=PTHR10996 from=3 to=365 evalue=3.2e-53)
ACD60_26_18

Not on your lists

comp(11947..12543)
DNA (597bp) protein (199aa)
seg (db=Seg db_id=seg from=9 to=43)
seg (db=Seg db_id=seg from=72 to=97)
seg (db=Seg db_id=seg from=167 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
ACD60_26_19

Not on your lists

comp(12645..15017)
DNA (2373bp) protein (791aa)
Penicillin binding protein 1A n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N356_9GAMM (db=UNIREF evalue=0.0 bit_score=868.0 identity=55.25 coverage=95.3223767383059)
ponA; penicillin-binding protein 1A
ponA; penicillin-binding protein 1A
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=30)
ACD60_26_20

Not on your lists

15187..16095
DNA (909bp) protein (303aa)
Type 4 fimbrial biogenesis protein PilM n=1 Tax=Methylococcus capsulatus RepID=Q60BY8_METCA (db=UNIREF evalue=6.0e-24 bit_score=115.0 identity=25.14 coverage=96.3696369636964)
pilM; type 4 fimbrial biogenesis protein PilM
Competence_A (db=HMMPfam db_id=PF11104 from=42 to=178 evalue=2.2e-34)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=78 to=169 evalue=2.1e-09)
ACD60_26_21

Not on your lists

16089..16592
DNA (504bp) protein (168aa)
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
Uncharacterized protein {ECO:0000313|EMBL:EKD53957.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_22

Not on your lists

16606..17412
DNA (807bp) protein (269aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD53958.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_23

Not on your lists

17399..18655
DNA (1257bp) protein (419aa)
Fimbrial assembly protein pilQ (fragment)
seg (db=Seg db_id=seg from=9 to=18)
coiled-coil (db=Coil db_id=coil from=103 to=124 evalue=NA)
T2SP_D (db=PatternScan db_id=PS00875 from=360 to=393 evalue=0.0 interpro_id=IPR004845 interpro_description=Type II secretion system gspD, conserved site GO=Molecular Function: protein transporter activity (GO:0008565))
ACD60_26_24

Not on your lists

18662..19192
DNA (531bp) protein (177aa)
aroK; shikimate kinase I
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=62 to=87 evalue=0.0 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=5 to=171 evalue=7.9e-50)
SKI (db=HMMPfam db_id=PF01202 from=15 to=171 evalue=5.1e-48 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
ACD60_26_25

Not on your lists

comp(19415..20101)
DNA (687bp) protein (229aa)
bacterial regulatory , arsR family protein
seg (db=Seg db_id=seg from=77 to=92)
seg (db=Seg db_id=seg from=183 to=196)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=90 evalue=3.8e-20)
ACD60_26_26

Not on your lists

comp(20121..20579)
DNA (459bp) protein (153aa)
hypothetical protein
NTF2-like (db=superfamily db_id=SSF54427 from=13 to=137 evalue=5.7e-14)
no description (db=Gene3D db_id=G3DSA:3.10.450.50 from=11 to=148 evalue=2.0e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD53962.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_27

Not on your lists

comp(20709..21173)
DNA (465bp) protein (155aa)
seg (db=Seg db_id=seg from=29 to=52)
seg (db=Seg db_id=seg from=77 to=146)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD53963.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_26_28

Not on your lists

21308..22372
DNA (1065bp) protein (355aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RS51_ALLVD (db=UNIREF evalue=7.0e-129 bit_score=464.0 identity=62.04 coverage=99.1549295774648)
seg (db=Seg db_id=seg from=177 to=185)
ACD60_26_29

Not on your lists

22396..23442
DNA (1047bp) protein (349aa)
alpha/beta hydrolase fold protein
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5BX86_NITHN (db=UNIREF evalue=3.0e-102 bit_score=375.0 identity=54.26 coverage=90.2578796561605)
UPF0017 (db=PatternScan db_id=PS01133 from=246 to=287 evalue=0.0 interpro_id=IPR000952 interpro_description=Uncharacterised protein family UPF0017, hydrolase-like, conserved site)
ACD60_26_30

Not on your lists

23462..25255
DNA (1794bp) protein (598aa)
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME23_RHOM4 (db=UNIREF evalue=0.0 bit_score=706.0 identity=57.57 coverage=99.1638795986622)
ribonucleoside-diphosphate reductase
ribonucleoside-diphosphate reductase
NrdJ_Z: ribonucleoside-diphosphate reductase (db=HMMTigr db_id=TIGR02504 from=9 to=584 evalue=1.0e-210 interpro_id=IPR013344 interpro_description=Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748), Molecular Function: class II ribonucleotide reductase activity (GO:0016960), Molecular Function: cobalamin binding (GO:0031419), Biological Process: oxidation reduc
Displaying items 1-30 of 42 in total

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