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ACD60_27

Alias: ACD60_33149.51263.17

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_27_1

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comp(1..105)
DNA (105bp) protein (35aa)
1..105 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54303.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_2

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293..1405
DNA (1113bp) protein (371aa)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Idiomarina loihiensis RepID=GCST_IDILO (db=UNIREF evalue=1.0e-118 bit_score=429.0 identity=60.0 coverage=94.8787061994609)
seg (db=Seg db_id=seg from=281 to=292)
ACD60_27_3

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1402..1791
DNA (390bp) protein (130aa)
gcvH; glycine cleavage system H protein
Glycine cleavage system H protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q1J2_PROST (db=UNIREF evalue=4.0e-37 bit_score=156.0 identity=60.16 coverage=92.3076923076923)
gcvH: glycine cleavage system H protein (db=HMMTigr db_id=TIGR00527 from=3 to=128 evalue=1.6e-57 interpro_id=IPR017453 interpro_description=Glycine cleavage H-protein, subgroup)
GLYCINE CLEAVAGE SYSTEM H PROTEIN (db=HMMPanther db_id=PTHR11715 from=1 to=124 evalue=1.5e-53 interpro_id=IPR002930 interpro_description=Glycine cleavage H-protein GO=Cellular Component: mitochondrion (GO:0005739), Cellular Component: glycine cleavage complex (GO:0005960), Biological Process: glycine catabolic process (GO:0006546))
ACD60_27_4

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1813..3216
DNA (1404bp) protein (468aa)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=GCSPA_NITMU (db=UNIREF evalue=7.0e-174 bit_score=613.0 identity=64.08 coverage=95.7264957264957)
Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain protein
Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain protein
GLYCINE DEHYDROGENASE (db=HMMPanther db_id=PTHR11773 from=1 to=443 evalue=1.8e-152 interpro_id=IPR020581 interpro_description=Glycine cleavage system P-protein-like)
ACD60_27_5

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3232..4689
DNA (1458bp) protein (486aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 2 n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=GCSPB_THISH (db=UNIREF evalue=0.0 bit_score=680.0 identity=69.17 coverage=98.3539094650206)
seg (db=Seg db_id=seg from=273 to=281)
ACD60_27_6

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comp(4743..5480)
DNA (738bp) protein (246aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
dapB: dihydrodipicolinate reductase (db=HMMTigr db_id=TIGR00036 from=2 to=244 evalue=1.1e-70 interpro_id=IPR011770 interpro_description=Dihydrodipicolinate reductase, bacterial/plant GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation reduction (GO:0055114))
DIHYDRODIPICOLINATE REDUCTASE (db=HMMPanther db_id=PTHR20836 from=2 to=244 evalue=1.5e-58 interpro_id=IPR011770 interpro_description=Dihydrodipicolinate reductase, bacterial/plant GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation reduction (GO:0055114))
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (db=superfamily db_id=SSF55347 from=108 to=216 evalue=2.1e-36)
ACD60_27_7

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5562..6869
DNA (1308bp) protein (436aa)
seg (db=Seg db_id=seg from=390 to=402)
Uncharacterized protein {ECO:0000313|EMBL:EKD54309.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_8

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6961..7974
DNA (1014bp) protein (338aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=208 to=230)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
seg (db=Seg db_id=seg from=267 to=283)
seg (db=Seg db_id=seg from=243 to=260)
ACD60_27_9

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comp(7958..8731)
DNA (774bp) protein (258aa)
fhuC; iron complex transport system ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=140 to=154 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
METAL ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF31 from=4 to=241 evalue=3.6e-67)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=241 evalue=3.6e-67)
ACD60_27_10

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comp(8719..9699)
DNA (981bp) protein (327aa)
bacterial transport system permease protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=301 to=320)
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=258)
transmembrane_regions (db=TMHMM db_id=tmhmm from=185 to=207)
ACD60_27_11

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9766..10257
DNA (492bp) protein (164aa)
RNA pyrophosphohydrolase n=8 Tax=Pseudomonas RepID=RPPH_PSEA7 (db=UNIREF evalue=5.0e-58 bit_score=226.0 identity=65.82 coverage=95.7317073170732)
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC:3.6.1.-)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=38 to=59 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=3 to=155 evalue=3.9e-52 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD60_27_12

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10282..12558
DNA (2277bp) protein (759aa)
phosphoenolpyruvate-protein phosphotransferase PtsP
phosphoenolpyruvate-protein phosphotransferase PtsP
Phosphoenolpyruvate-protein phosphotransferase PtsP n=2 Tax=Legionella longbeachae RepID=D3HNQ1_LEGLN (db=UNIREF evalue=0.0 bit_score=811.0 identity=57.07 coverage=99.604743083004)
seg (db=Seg db_id=seg from=209 to=230)
ACD60_27_13

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13243..13458
DNA (216bp) protein (72aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478H9_DECAR (db=UNIREF evalue=2.0e-09 bit_score=65.1 identity=55.17 coverage=79.1666666666667)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD60_27_14

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13468..14256
DNA (789bp) protein (263aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=6 Tax=Pseudomonas aeruginosa RepID=LGT_PSEA7 (db=UNIREF evalue=5.0e-86 bit_score=320.0 identity=60.23 coverage=98.0988593155894)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=141)
ACD60_27_15

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14307..15101
DNA (795bp) protein (265aa)
Thymidylate synthase n=5 Tax=Legionella pneumophila RepID=TYSY_LEGPA (db=UNIREF evalue=2.0e-117 bit_score=425.0 identity=73.48 coverage=99.2452830188679)
thyA; thymidylate synthase (EC:2.1.1.45)
thyA; thymidylate synthase (EC:2.1.1.45)
THYMIDYLATE_SYNTHASE (db=PatternScan db_id=PS00091 from=126 to=154 evalue=0.0 interpro_id=IPR020940 interpro_description=Thymidylate synthase, active site GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
ACD60_27_16

Not on your lists

15117..15590
DNA (474bp) protein (158aa)
conserved exported protein of unknown function
Conserved domain protein n=5 Tax=Legionella pneumophila RepID=Q5ZZC0_LEGPH (db=UNIREF evalue=6.0e-14 bit_score=79.7 identity=32.58 coverage=81.0126582278481)
Uncharacterized protein {ECO:0000313|EMBL:EKD54296.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_17

Not on your lists

15591..15893
DNA (303bp) protein (101aa)
coiled-coil (db=Coil db_id=coil from=54 to=86 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD54297.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_18

Not on your lists

15924..16811
DNA (888bp) protein (296aa)
mandelate racemase/muconate lactonizing protein
no description (db=Gene3D db_id=G3DSA:3.30.390.10 from=2 to=173 evalue=9.3e-43)
ENOLASE SUPERFAMILY, MANDELATE RACEMASE (db=HMMPanther db_id=PTHR13794 from=181 to=290 evalue=2.1e-25 interpro_id=IPR001354 interpro_description=Mandelate racemase/muconate lactonizing enzyme GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
MANDELATE RACEMASE (db=HMMPanther db_id=PTHR13794:SF2 from=181 to=290 evalue=2.1e-25 interpro_id=IPR015654 interpro_description=Mandelate racemase)
ACD60_27_19

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16814..17680
DNA (867bp) protein (289aa)
Amidohydrolase 2 n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NJC3_ROSCS (db=UNIREF evalue=2.0e-68 bit_score=262.0 identity=45.94 coverage=96.8858131487889)
amidohydrolase
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=282 evalue=1.6e-63)
Amidohydro_2 (db=HMMPfam db_id=PF04909 from=31 to=280 evalue=7.1e-32 interpro_id=IPR006992 interpro_description=Amidohydrolase 2 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD60_27_20

Not on your lists

17702..18547
DNA (846bp) protein (282aa)
ureidoglycolate lyase
ureidoglycolate lyase
Putative uncharacterized protein hpcE_1 n=1 Tax=Ruegeria sp. R11 RepID=B7QXJ3_9RHOB (db=UNIREF evalue=8.0e-102 bit_score=373.0 identity=62.14 coverage=98.5815602836879)
FUMARYLACETOACETATE HYDROLASE DOMAIN CONTAINING 2 (db=HMMPanther db_id=PTHR11820:SF6 from=19 to=281 evalue=1.3e-90)
ACD60_27_21

Not on your lists

18637..19776
DNA (1140bp) protein (380aa)
seg (db=Seg db_id=seg from=360 to=373)
Uncharacterized protein {ECO:0000313|EMBL:EKD54301.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_22

Not on your lists

comp(19741..20499)
DNA (759bp) protein (253aa)
coiled-coil (db=Coil db_id=coil from=86 to=107 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD54302.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_23
unknown

Not on your lists

comp(20636..21343)
DNA (708bp) protein (236aa)
coiled-coil (db=Coil db_id=coil from=128 to=149 evalue=NA)
seg (db=Seg db_id=seg from=31 to=42)
seg (db=Seg db_id=seg from=216 to=234)
ACD60_27_24

Not on your lists

comp(21437..21643)
DNA (207bp) protein (69aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=16 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD54264.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_27_25

Not on your lists

21789..24011
DNA (2223bp) protein (741aa)
Ribonuclease R n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQN3_PSEU5 (db=UNIREF evalue=0.0 bit_score=883.0 identity=58.78 coverage=95.9514170040486)
rnr; RNase R, 3'-5' exoribonuclease
rnr; RNase R, 3'-5' exoribonuclease
seg (db=Seg db_id=seg from=729 to=737)
ACD60_27_26

Not on your lists

24008..24754
DNA (747bp) protein (249aa)
TrmH family RNA methyltransferase
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=3 to=245 evalue=4.7e-74 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH, group 3 GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=51 to=246 evalue=3.1e-73)
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=51 to=246 evalue=3.1e-73)
ACD60_27_27

Not on your lists

comp(24690..25943)
DNA (1254bp) protein (418aa)
seg (db=Seg db_id=seg from=292 to=303)
seg (db=Seg db_id=seg from=163 to=174)
seg (db=Seg db_id=seg from=37 to=55)
coiled-coil (db=Coil db_id=coil from=265 to=286 evalue=NA)
ACD60_27_28

Not on your lists

comp(25973..27064)
DNA (1092bp) protein (364aa)
GTP-dependent nucleic acid-binding protein EngD
GTP-dependent nucleic acid-binding protein EngD
GTP-binding protein YchF n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SQ1_PSEA6 (db=UNIREF evalue=3.0e-147 bit_score=525.0 identity=69.42 coverage=99.4505494505495)
seg (db=Seg db_id=seg from=183 to=198)
ACD60_27_29

Not on your lists

comp(27067..27648)
DNA (582bp) protein (194aa)
Peptidyl-tRNA hydrolase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=PTH_THICR (db=UNIREF evalue=4.0e-52 bit_score=207.0 identity=53.4 coverage=97.9381443298969)
peptidyl-tRNA hydrolase, PTH1 family
PEPT_TRNA_HYDROL_2 (db=PatternScan db_id=PS01196 from=111 to=121 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
pth: peptidyl-tRNA hydrolase (db=HMMTigr db_id=TIGR00447 from=4 to=190 evalue=7.4e-71 interpro_id=IPR001328 interpro_description=Peptidyl-tRNA hydrolase GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
ACD60_27_30

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comp(27662..28378)
DNA (717bp) protein (239aa)
rplY; 50S ribosomal protein L25/general stress protein Ctc
50S ribosomal protein L25 n=1 Tax=Idiomarina baltica OS145 RepID=A3WQH6_9GAMM (db=UNIREF evalue=4.0e-54 bit_score=214.0 identity=55.61 coverage=77.4058577405858)
seg (db=Seg db_id=seg from=187 to=238)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=4 to=201 evalue=2.5e-56 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
Displaying items 1-30 of 52 in total

View Taxonomy