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ACD60_29

Alias: ACD60_2896.52582.19

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD60_29_1

Not on your lists

comp(180..1034)
DNA (855bp) protein (285aa)
Bifunctional protein folD n=1 Tax=Marinobacter algicola DG893 RepID=A6F1A2_9ALTE (db=UNIREF evalue=2.0e-105 bit_score=385.0 identity=64.87 coverage=97.5438596491228)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=260 to=268 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD60_29_2

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comp(1048..2445)
DNA (1398bp) protein (466aa)
xylE; D-xylose-proton symporter
seg (db=Seg db_id=seg from=50 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
ACD60_29_3

Not on your lists

comp(2463..3866)
DNA (1404bp) protein (468aa)
hypothetical protein
seg (db=Seg db_id=seg from=278 to=287)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
SEL-1-LIKE PROTEIN, SEL-1L (db=HMMPanther db_id=PTHR11102:SF11 from=89 to=427 evalue=8.7e-71)
ACD60_29_4

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comp(3882..5081)
DNA (1200bp) protein (400aa)
ornithine aminotransferase (EC:2.6.1.13)
ornithine aminotransferase (EC:2.6.1.13)
Aminotransferase n=2 Tax=Nitrosococcus oceani RepID=Q3JAG3_NITOC (db=UNIREF evalue=8.0e-148 bit_score=527.0 identity=65.47 coverage=97.5)
seg (db=Seg db_id=seg from=249 to=259)
ACD60_29_5

Not on your lists

5267..5377
DNA (111bp) protein (37aa)
5267..5377 + (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD54452.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD60_29_6

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5476..6783
DNA (1308bp) protein (436aa)
23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Marinobacter aquaeolei VT8 RepID=RUMA_MARAV (db=UNIREF evalue=2.0e-130 bit_score=469.0 identity=50.11 coverage=99.5412844036697)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA
TRMA_1 (db=PatternScan db_id=PS01230 from=366 to=396 evalue=0.0 interpro_id=IPR010280 interpro_description=(Uracil-5)-methyltransferase GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
ACD60_29_7

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6785..8827
DNA (2043bp) protein (681aa)
RelA/SpoT protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DRX7_AZOVD (db=UNIREF evalue=9.0e-175 bit_score=617.0 identity=43.16 coverage=99.5594713656388)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
spoT_relA: RelA/SpoT family protein (db=HMMTigr db_id=TIGR00691 from=57 to=676 evalue=2.0e-154 interpro_id=IPR004811 interpro_description=RelA/SpoT protein GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969))
ACD60_29_8

Not on your lists

8824..11601
DNA (2778bp) protein (926aa)
barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY
barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY
Sensor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL29_HAHCH (db=UNIREF evalue=6.0e-143 bit_score=512.0 identity=35.61 coverage=96.2203023758099)
seg (db=Seg db_id=seg from=338 to=348)
ACD60_29_9

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11756..13285
DNA (1530bp) protein (510aa)
ydgR; peptide transport protein
ydgR; peptide transport protein
Peptide transport protein, POT family n=3 Tax=Legionella pneumophila RepID=Q5ZVA7_LEGPH (db=UNIREF evalue=5.0e-133 bit_score=478.0 identity=53.31 coverage=94.3137254901961)
transmembrane_regions (db=TMHMM db_id=tmhmm from=279 to=301)
ACD60_29_10

Not on your lists

comp(13338..14354)
DNA (1017bp) protein (339aa)
NAD(P) transhydrogenase subunit alpha (EC:1.6.1.2)
Alanine dehydrogenase/pyridine nucleotide transhydrogenase domain protein n=2 Tax=Legionella longbeachae RepID=D1REB6_LEGLO (db=UNIREF evalue=4.0e-70 bit_score=268.0 identity=44.72 coverage=94.6902654867257)
NADP TRANSHYDROGENASE (db=HMMPanther db_id=PTHR10160 from=1 to=318 evalue=1.8e-35)
Formate/glycerate dehydrogenase catalytic domain-like (db=superfamily db_id=SSF52283 from=4 to=184 evalue=5.3e-29)
ACD60_29_11

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comp(14351..15247)
DNA (897bp) protein (299aa)
PP-loop family protein n=2 Tax=Legionella longbeachae RepID=D1RH33_LEGLO (db=UNIREF evalue=4.0e-117 bit_score=424.0 identity=71.22 coverage=91.6387959866221)
ydaO; C32 tRNA thiolase
ydaO; C32 tRNA thiolase
coiled-coil (db=Coil db_id=coil from=276 to=297 evalue=NA)
ACD60_29_12

Not on your lists

comp(15266..15478)
DNA (213bp) protein (71aa)
cspA1; cold shock protein (beta-ribbon, CspA family)
COLD_SHOCK (db=PatternScan db_id=PS00352 from=18 to=36 evalue=0.0 interpro_id=IPR019844 interpro_description=Cold-shock conserved site)
Cold shock protein, CspA type (db=HMMPIR db_id=PIRSF002599 from=4 to=70 evalue=1.3e-37 interpro_id=IPR012156 interpro_description=Cold shock, CspA GO=Molecular Function: nucleic acid binding (GO:0003676))
COLD SHOCK DOMAIN CONTAINING PROTEINS (db=HMMPanther db_id=PTHR11544 from=1 to=66 evalue=9.7e-33)
ACD60_29_13

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comp(15539..16381)
DNA (843bp) protein (281aa)
hypothetical protein
seg (db=Seg db_id=seg from=47 to=60)
seg (db=Seg db_id=seg from=181 to=195)
YdjC (db=HMMPfam db_id=PF04794 from=12 to=266 evalue=1.9e-50 interpro_id=IPR006879 interpro_description=YdjC-like protein)
ACD60_29_14

Not on your lists

16401..17939
DNA (1539bp) protein (513aa)
dolichyl-phosphate-mannose-protein mannosyltransferase family protein
Dolichyl-phosphate-mannose-protein mannosyltransferase family protein n=1 Tax=Rickettsiella grylli RepID=A8PP95_9COXI (db=UNIREF evalue=2.0e-70 bit_score=270.0 identity=32.37 coverage=98.8304093567251)
seg (db=Seg db_id=seg from=308 to=323)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
ACD60_29_15

Not on your lists

comp(17896..18885)
DNA (990bp) protein (330aa)
polyprenyl-phosphate beta-D-glucosyltransferase (EC:2.4.1.78)
polyprenyl-phosphate beta-D-glucosyltransferase (EC:2.4.1.78)
Glycosyltransferase, group 2 family protein (Glycan biosynthesis) n=5 Tax=Legionella pneumophila RepID=Q5ZSN9_LEGPH (db=UNIREF evalue=1.0e-91 bit_score=339.0 identity=52.85 coverage=95.1515151515152)
seg (db=Seg db_id=seg from=284 to=296)
ACD60_29_16

Not on your lists

comp(18938..19510)
DNA (573bp) protein (191aa)
methylated-DNA--protein-cysteine methyltransferase
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y9A7_9GAMM (db=UNIREF evalue=8.0e-42 bit_score=172.0 identity=50.33 coverage=78.5340314136126)
seg (db=Seg db_id=seg from=161 to=172)
MGMT (db=PatternScan db_id=PS00374 from=142 to=148 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
ACD60_29_17

Not on your lists

comp(19539..20300)
DNA (762bp) protein (254aa)
Hydroxyacylglutathione hydrolase n=1 Tax=Idiomarina loihiensis RepID=GLO2_IDILO (db=UNIREF evalue=1.0e-68 bit_score=262.0 identity=51.0 coverage=98.0314960629921)
hydroxyacylglutathione hydrolase GloB
GSH_gloB: hydroxyacylglutathione hydrolase (db=HMMTigr db_id=TIGR03413 from=1 to=252 evalue=1.1e-136 interpro_id=IPR017782 interpro_description=Hydroxyacylglutathione hydrolase GO=Molecular Function: hydroxyacylglutathione hydrolase activity (GO:0004416), Molecular Function: zinc ion binding (GO:0008270))
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=1 to=252 evalue=3.2e-80)
ACD60_29_18

Not on your lists

20360..21226
DNA (867bp) protein (289aa)
msrA; bifunctional methionine sulfoxide reductase B/A protein
msrA; bifunctional methionine sulfoxide reductase B/A protein
Peptide methionine sulfoxide reductase n=6 Tax=Coxiella burnetii RepID=A9KGA4_COXBN (db=UNIREF evalue=1.0e-109 bit_score=399.0 identity=65.6 coverage=97.2318339100346)
msrA: peptide-methionine (S)-S-oxide reducta (db=HMMTigr db_id=TIGR00401 from=128 to=278 evalue=2.3e-71 interpro_id=IPR002569 interpro_description=Peptide methionine sulphoxide reductase MsrA GO=Molecular Function: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor (GO:0016671), Biological Process: protein metabolic process (GO:0019538), Biological Process: oxidation reduction (GO:0055114))
ACD60_29_19

Not on your lists

21562..22227
DNA (666bp) protein (222aa)
polysaccharide deacetylase
seg (db=Seg db_id=seg from=3 to=20)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=12 to=215 evalue=1.8e-55 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
Polysacc_deac_1 (db=HMMPfam db_id=PF01522 from=34 to=152 evalue=4.2e-34 interpro_id=IPR002509 interpro_description=Polysaccharide deacetylase GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD60_29_20

Not on your lists

comp(22198..23727)
DNA (1530bp) protein (510aa)
multidrug resistance protein B
multidrug resistance protein B
Multidrug resistance protein B n=5 Tax=Coxiella burnetii RepID=A9KFF5_COXBN (db=UNIREF evalue=7.0e-123 bit_score=444.0 identity=47.12 coverage=91.5686274509804)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=97)
ACD60_29_21

Not on your lists

comp(23724..24590)
DNA (867bp) protein (289aa)
emrA; multidrug efflux system
seg (db=Seg db_id=seg from=10 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=97 to=109)
ACD60_29_22

Not on your lists

comp(24637..25167)
DNA (531bp) protein (177aa)
Cytochrome B561-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD60_29_23

Not on your lists

comp(25160..25735)
DNA (576bp) protein (192aa)
conserved exported protein of unknown function
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
no description (db=HMMSmart db_id=SM00867 from=27 to=190 evalue=2.2e-59 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
YceI-like (db=superfamily db_id=SSF101874 from=26 to=191 evalue=6.4e-49 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
ACD60_29_24

Not on your lists

comp(25786..26274)
DNA (489bp) protein (163aa)
Outer membrane protein MIP n=7 Tax=Legionellaceae RepID=MIP_LEGLO (db=UNIREF evalue=1.0e-42 bit_score=175.0 identity=61.65 coverage=80.9815950920245)
mip; macrophage infectivity potentiator (EC:5.2.1.8)
seg (db=Seg db_id=seg from=9 to=23)
FK506 BINDING PROTEIN (db=HMMPanther db_id=PTHR10516 from=62 to=160 evalue=1.0e-48 interpro_id=IPR001179 interpro_description=Peptidyl-prolyl cis-trans isomerase, FKBP-type GO=Biological Process: protein folding (GO:0006457))
ACD60_29_25

Not on your lists

comp(26298..26609)
DNA (312bp) protein (104aa)
NTP binding protein (contains STAS domain)
Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=1 to=103 evalue=2.0e-11 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
no description (db=Gene3D db_id=G3DSA:3.30.750.24 from=18 to=101 evalue=1.5e-06 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
STAS (db=ProfileScan db_id=PS50801 from=19 to=103 evalue=10.544 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
ACD60_29_26

Not on your lists

comp(26609..27238)
DNA (630bp) protein (210aa)
Toluene tolerance protein Ttg2D n=1 Tax=Rickettsiella grylli RepID=A8PK45_9COXI (db=UNIREF evalue=3.0e-46 bit_score=187.0 identity=48.57 coverage=82.8571428571429)
Signal peptide protein, toluene tolerance protein Ttg2D
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
ACD60_29_27

Not on your lists

comp(27235..27747)
DNA (513bp) protein (171aa)
ABC-type transport system involved in resistance to organic solvents periplasmic component n=1 Tax=Rickettsiella grylli RepID=A8PK44_9COXI (db=UNIREF evalue=3.0e-33 bit_score=144.0 identity=56.59 coverage=74.8538011695906)
ttg2C; toluene tolerance protein Ttg2C
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=10 to=27)
ACD60_29_28

Not on your lists

comp(27747..28529)
DNA (783bp) protein (261aa)
hypothetical protein
hypothetical protein
Toluene tolerance protein Ttg2B n=1 Tax=Rickettsiella grylli RepID=A8PK42_9COXI (db=UNIREF evalue=2.0e-88 bit_score=328.0 identity=66.15 coverage=99.2337164750958)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
ACD60_29_29

Not on your lists

comp(28533..29348)
DNA (816bp) protein (272aa)
organic solvents resistance ABC transporter ATPase
organic solvents resistance ABC transporter ATPase
Toluene tolerance protein Ttg2A n=1 Tax=Rickettsiella grylli RepID=A8PK41_9COXI (db=UNIREF evalue=2.0e-92 bit_score=342.0 identity=67.69 coverage=95.2205882352941)
seg (db=Seg db_id=seg from=77 to=88)
ACD60_29_30

Not on your lists

comp(29323..29565)
DNA (243bp) protein (81aa)
yvlC; Uncharacterized membrane protein yvlC
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
seg (db=Seg db_id=seg from=39 to=54)
PspC (db=HMMPfam db_id=PF04024 from=8 to=67 evalue=3.7e-26 interpro_id=IPR007168 interpro_description=PspC)
Displaying items 1-30 of 52 in total

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