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ACD61_97

Alias: ACD61_88756.5377.9

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD61_97_1

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518..1141
DNA (624bp) protein (208aa)
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=99 to=123 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=207 evalue=1.0e-69 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=207 evalue=5.5e-53)
ACD61_97_2

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1914..2159
DNA (246bp) protein (82aa)
DNA-directed RNA polymerase subunit alpha
RNA_pol_A_CTD (db=HMMPfam db_id=PF03118 from=14 to=72 evalue=9.1e-17 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
C-terminal domain of RNA polymerase alpha subunit (db=superfamily db_id=SSF47789 from=15 to=81 evalue=1.6e-12 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
RPOA_UREPA_Q9PQN4; (db=BlastProDom db_id=PD001179 from=23 to=78 evalue=1.0e-09 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD61_97_3

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2163..2609
DNA (447bp) protein (149aa)
50S ribosomal protein L17
seg (db=Seg db_id=seg from=36 to=47)
seg (db=Seg db_id=seg from=125 to=148)
no description (db=Gene3D db_id=G3DSA:3.90.1030.10 from=3 to=119 evalue=6.1e-20 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD61_97_4

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2606..3043
DNA (438bp) protein (146aa)
rplM; 50S ribosomal protein L13
seg (db=Seg db_id=seg from=140 to=145)
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=3 to=138 evalue=2.3e-52 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=15 to=133 evalue=8.3e-41 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD61_97_5

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3046..3525
DNA (480bp) protein (160aa)
rpsI; 30S ribosomal protein S9
seg (db=Seg db_id=seg from=13 to=23)
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=37 to=159 evalue=1.4e-32 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=31 to=159 evalue=1.6e-31 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
ACD61_97_6

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comp(3526..4428)
DNA (903bp) protein (301aa)
seg (db=Seg db_id=seg from=160 to=169)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=1 to=251 evalue=3.4e-08 interpro_id=IPR011009 interpro_description=Protein kinase-like domain)
Uncharacterized protein {ECO:0000313|EMBL:EKD52615.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD61_97_7

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4594..4920
DNA (327bp) protein (109aa)
seg (db=Seg db_id=seg from=30 to=41)
Uncharacterized protein {ECO:0000313|EMBL:EKD52616.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD61_97_8

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4917..5414
DNA (498bp) protein (166aa)
Ribonuclease H n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQZ2_9CLOT (db=UNIREF evalue=1.0e-16 bit_score=89.0 identity=39.22 coverage=87.9518072289157)
ribonuclease HII
seg (db=Seg db_id=seg from=44 to=56)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=6 to=165 evalue=2.7e-30 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
Displaying 8 items

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