ggKbase home page

ACD62_7

Alias: ACD62_19536.73306.16

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_7_1

Not on your lists

3..212
DNA (210bp) protein (70aa)
3..212 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51858.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_2

Not on your lists

344..1324
DNA (981bp) protein (327aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=71 evalue=3.6e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=4 to=65 evalue=6.1e-14)
no description (db=HMMSmart db_id=SM00530 from=7 to=63 evalue=8.8e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=8 to=62 evalue=8.3e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD62_7_3

Not on your lists

1471..4794
DNA (3324bp) protein (1108aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q619_9BACT (db=UNIREF evalue=0.0 bit_score=1379.0 identity=65.34 coverage=99.8194945848375)
Superfamily II DNA/RNA helicase
Superfamily II DNA/RNA helicase
seg (db=Seg db_id=seg from=13 to=28)
ACD62_7_4

Not on your lists

4791..8558
DNA (3768bp) protein (1256aa)
Putative uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D4XZV9_9CHLR (db=UNIREF evalue=0.0 bit_score=855.0 identity=43.23 coverage=98.0891719745223)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=481 to=495)
ACD62_7_5

Not on your lists

8555..9523
DNA (969bp) protein (323aa)
ATP-dependent DNA helicase
seg (db=Seg db_id=seg from=198 to=210)
Uncharacterized protein {ECO:0000313|EMBL:EKD51862.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ATP-dependent DNA helicase, putative n=4 Tax=Gammaproteobacteria RepID=B7J6P3_ACIF2
ACD62_7_6

Not on your lists

9520..11397
DNA (1878bp) protein (626aa)
SMC protein-like protein
seg (db=Seg db_id=seg from=186 to=200)
seg (db=Seg db_id=seg from=49 to=60)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=428 evalue=2.0e-23)
ACD62_7_7

Not on your lists

11425..11583
DNA (159bp) protein (53aa)
11425..11583 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51864.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_8

Not on your lists

11580..13205
DNA (1626bp) protein (542aa)
transcriptional regulator
transcriptional regulator
Putative transcriptional regulator n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L6E1_9DELT (db=UNIREF evalue=2.0e-100 bit_score=370.0 identity=39.66 coverage=97.0479704797048)
AAA_4 (db=HMMPfam db_id=PF04326 from=16 to=130 evalue=1.6e-12 interpro_id=IPR007421 interpro_description=ATPase, AAA-4 GO=Molecular Function: ATP binding (GO:0005524))
ACD62_7_9

Not on your lists

comp(13263..13583)
DNA (321bp) protein (107aa)
13263..13583 - (rbs_motif=AGGAG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD51866.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_10

Not on your lists

comp(13599..14408)
DNA (810bp) protein (270aa)
13599..14408 - (rbs_motif=GGAGG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD51867.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_11

Not on your lists

comp(14405..15649)
DNA (1245bp) protein (415aa)
Phage integrase
Phage integrase
Phage integrase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6Z5_NITMU (db=UNIREF evalue=7.0e-130 bit_score=467.0 identity=58.19 coverage=95.9036144578313)
seg (db=Seg db_id=seg from=63 to=73)
ACD62_7_12

Not on your lists

16559..16864
DNA (306bp) protein (102aa)
seg (db=Seg db_id=seg from=63 to=75)
seg (db=Seg db_id=seg from=22 to=34)
seg (db=Seg db_id=seg from=10 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
ACD62_7_13

Not on your lists

16919..17677
DNA (759bp) protein (253aa)
dehydrogenase/reductase 11 (EC:1.1.1.-)
seg (db=Seg db_id=seg from=14 to=36)
ADH_SHORT (db=PatternScan db_id=PS00061 from=143 to=171 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=3 to=245 evalue=1.3e-94 interpro_id=IPR002198 interpro_description=Short-chain dehydrogenase/reductase SDR GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491))
ACD62_7_14

Not on your lists

17693..19141
DNA (1449bp) protein (483aa)
FAD/FMN-containing dehydrogenase
seg (db=Seg db_id=seg from=208 to=218)
D-LACTATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11748 from=25 to=477 evalue=7.7e-58)
FAD-binding domain (db=superfamily db_id=SSF56176 from=8 to=220 evalue=1.3e-39 interpro_id=IPR016166 interpro_description=FAD-binding, type 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: FAD binding (GO:0050660))
ACD62_7_15

Not on your lists

19240..19485
DNA (246bp) protein (82aa)
19240..19485 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51872.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_16

Not on your lists

19460..20005
DNA (546bp) protein (182aa)
seg (db=Seg db_id=seg from=173 to=181)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=1 to=181 evalue=1.6e-07)
DUF1814 (db=HMMPfam db_id=PF08843 from=28 to=173 evalue=7.9e-06 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
Uncharacterized protein {ECO:0000313|EMBL:EKD51873.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_17

Not on your lists

comp(20145..21203)
DNA (1059bp) protein (353aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3ARL6_CHLCH (db=UNIREF evalue=5.0e-48 bit_score=195.0 identity=36.05 coverage=94.9008498583569)
seg (db=Seg db_id=seg from=73 to=91)
Fic-like (db=superfamily db_id=SSF140931 from=184 to=351 evalue=8.7e-24)
ACD62_7_18

Not on your lists

21280..21834
DNA (555bp) protein (185aa)
seg (db=Seg db_id=seg from=168 to=173)
Uncharacterized protein {ECO:0000313|EMBL:EKD51875.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_19

Not on your lists

comp(21836..22174)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ30_9BACT (db=UNIREF evalue=1.0e-31 bit_score=138.0 identity=60.95 coverage=92.0353982300885)
Uncharacterized protein {ECO:0000313|EMBL:EKD51876.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_20

Not on your lists

comp(22158..22931)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ29_9BACT (db=UNIREF evalue=1.0e-103 bit_score=379.0 identity=71.6 coverage=98.4496124031008)
repressor protein
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=110 evalue=3.4e-14)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=5.1e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD62_7_21

Not on your lists

comp(23223..25157)
DNA (1935bp) protein (645aa)
Arginine decarboxylase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01P25_SOLUE (db=UNIREF evalue=0.0 bit_score=689.0 identity=50.79 coverage=97.0542635658915)
arginine decarboxylase (EC:4.1.1.19)
arginine decarboxylase (EC:4.1.1.19)
seg (db=Seg db_id=seg from=227 to=240)
ACD62_7_22

Not on your lists

comp(25154..25981)
DNA (828bp) protein (276aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY75_9PROT (db=UNIREF evalue=5.0e-24 bit_score=115.0 identity=28.63 coverage=80.4347826086957)
DUF45 (db=HMMPfam db_id=PF01863 from=42 to=248 evalue=7.9e-42 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
Uncharacterized protein {ECO:0000313|EMBL:EKD51879.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_23

Not on your lists

comp(25953..26117)
DNA (165bp) protein (55aa)
25953..26117 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51880.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_24

Not on your lists

26145..26375
DNA (231bp) protein (77aa)
26145..26375 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51881.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_7_25

Not on your lists

26732..28279
DNA (1548bp) protein (516aa)
Mg chelatase-related protein n=1 Tax=Geobacter sulfurreducens RepID=Q74FW3_GEOSL (db=UNIREF evalue=5.0e-165 bit_score=584.0 identity=54.71 coverage=97.8682170542636)
comM; competence ATPase ComM
comM; competence ATPase ComM
TIGR00368: Mg chelatase-like protein (db=HMMTigr db_id=TIGR00368 from=5 to=504 evalue=1.4e-238 interpro_id=IPR004482 interpro_description=Mg chelatase-related protein)
ACD62_7_26

Not on your lists

comp(28679..29689)
DNA (1011bp) protein (337aa)
metal-dependent hydrolase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=8 to=26)
seg (db=Seg db_id=seg from=273 to=292)
ACD62_7_27

Not on your lists


29920..30093
DNA (174bp) protein (58aa)
seg (db=Seg db_id=seg from=24 to=40)
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=57 evalue=3.1e-28 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=8 to=55 evalue=6.9e-22 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=4 to=55 evalue=1.1e-17 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD62_7_28

Not on your lists

comp(30113..31144)
DNA (1032bp) protein (344aa)
Uroporphyrinogen decarboxylase HemE n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVN2_9DELT (db=UNIREF evalue=1.0e-72 bit_score=276.0 identity=44.58 coverage=95.6395348837209)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
UROD_1 (db=PatternScan db_id=PS00906 from=20 to=29 evalue=0.0 interpro_id=IPR000257 interpro_description=Uroporphyrinogen decarboxylase (URO-D) GO=Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin biosynthetic process (GO:0006779))
hemE: uroporphyrinogen decarboxylase (db=HMMTigr db_id=TIGR01464 from=6 to=341 evalue=1.7e-119 interpro_id=IPR006361 interpro_description=Uroporphyrinogen decarboxylase HemE GO=Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin biosynthetic process (GO:0006779))
ACD62_7_29

Not on your lists

comp(31188..32915)
DNA (1728bp) protein (576aa)
Sigma-54 dependent transcriptional regulator, Fis family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D9F3_MYXXD (db=UNIREF evalue=5.0e-90 bit_score=335.0 identity=34.38 coverage=94.6180555555556)
Fis family transcriptional regulator
Fis family transcriptional regulator
SIGMA54_INTERACT_3 (db=PatternScan db_id=PS00688 from=460 to=469 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
ACD62_7_30

Not on your lists

comp(32984..33982)
DNA (999bp) protein (333aa)
seg (db=Seg db_id=seg from=164 to=184)
seg (db=Seg db_id=seg from=186 to=196)
Uncharacterized protein {ECO:0000313|EMBL:EKD51832.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 66 in total

View Taxonomy