ggKbase home page

ACD62_11

Alias: ACD62_39621.35103.13

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_11_1

Not on your lists

2..598
DNA (597bp) protein (199aa)
2..598 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51013.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_2

Not on your lists

641..4939
DNA (4299bp) protein (1433aa)
hypothetical protein (db=KEGG evalue=3.0e-12 bit_score=79.0 identity=35.24 coverage=12.7704117236567)
Putative uncharacterized protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0U9_DESRD (db=UNIREF evalue=3.0e-12 bit_score=79.0 identity=35.24 coverage=12.7704117236567)
seg (db=Seg db_id=seg from=10 to=20)
seg (db=Seg db_id=seg from=503 to=510)
ACD62_11_3

Not on your lists

comp(4955..6316)
DNA (1362bp) protein (454aa)
HipA domain protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RWK4_YERBE (db=UNIREF evalue=4.0e-68 bit_score=262.0 identity=38.86 coverage=93.6123348017621)
hypothetical protein
HipA_C (db=HMMPfam db_id=PF07804 from=297 to=375 evalue=1.1e-09 interpro_id=IPR012893 interpro_description=HipA-like, C-terminal)
HipA_N (db=HMMPfam db_id=PF07805 from=216 to=292 evalue=3.2e-07 interpro_id=IPR012894 interpro_description=HipA-like, N-terminal)
ACD62_11_4

Not on your lists

6589..7020
DNA (432bp) protein (144aa)
6589..7020 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51016.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_5

Not on your lists

7066..8556
DNA (1491bp) protein (497aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
ACD62_11_6

Not on your lists

8573..10294
DNA (1722bp) protein (574aa)
putative glutathione-regulated potassium-efflux system
transmembrane_regions (db=TMHMM db_id=tmhmm from=360 to=379)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=108)
seg (db=Seg db_id=seg from=58 to=74)
ACD62_11_7

Not on your lists

comp(10309..10959)
DNA (651bp) protein (217aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=193 to=212)
Multiheme cytochromes (db=superfamily db_id=SSF48695 from=21 to=99 evalue=5.7e-08)
Uncharacterized protein {ECO:0000313|EMBL:EKD51019.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_8

Not on your lists

comp(10983..13064)
DNA (2082bp) protein (694aa)
translation elongation factor G
translation elongation factor G
Translation elongation factor G n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2YZV2_9BACT (db=UNIREF evalue=1.0e-164 bit_score=584.0 identity=43.53 coverage=97.1181556195965)
seg (db=Seg db_id=seg from=520 to=525)
ACD62_11_9

Not on your lists

comp(13197..14273)
DNA (1077bp) protein (359aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=280 to=356 evalue=8.2e-08)
Uncharacterized protein {ECO:0000313|EMBL:EKD51021.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_10

Not on your lists

comp(14307..15686)
DNA (1380bp) protein (460aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=412 to=434)
seg (db=Seg db_id=seg from=26 to=41)
Uncharacterized protein {ECO:0000313|EMBL:EKD51022.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_11

Not on your lists

comp(15738..16472)
DNA (735bp) protein (245aa)
GrpE protein HSP-70 cofactor
seg (db=Seg db_id=seg from=40 to=45)
GRPE (db=PatternScan db_id=PS01071 from=199 to=242 evalue=0.0 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Cellular Component: mitochondrion (GO:0005739), Biological Process: protein folding (GO:0006457), Biological Process: protein import into mitochondrial matrix (GO:0030150), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:0051087))
GrpE (db=HMMPfam db_id=PF01025 from=89 to=243 evalue=1.8e-43 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Cellular Component: mitochondrion (GO:0005739), Biological Process: protein folding (GO:0006457), Biological Process: protein import into mitochondrial matrix (GO:0030150), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:0051087))
ACD62_11_12

Not on your lists

16614..17606
DNA (993bp) protein (331aa)
chaperone protein DnaJ
seg (db=Seg db_id=seg from=173 to=184)
DNAJ/HSP40 (db=HMMPanther db_id=PTHR11821 from=8 to=315 evalue=1.7e-27 interpro_id=IPR015609 interpro_description=Molecular chaperone, heat shock protein, Hsp40, DnaJ)
CHAPERONE PROTEIN DNAJ (db=HMMPanther db_id=PTHR11821:SF79 from=8 to=315 evalue=1.7e-27)
ACD62_11_13

Not on your lists

17631..19541
DNA (1911bp) protein (637aa)
extracellular ligand-binding receptor
Extracellular ligand-binding receptor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLN5_DESAA (db=UNIREF evalue=8.0e-40 bit_score=169.0 identity=22.83 coverage=96.5463108320251)
seg (db=Seg db_id=seg from=22 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD62_11_14

Not on your lists

19638..20648
DNA (1011bp) protein (337aa)
thiamine-monophosphate kinase
Thiamine-monophosphate kinase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCU5_9FIRM (db=UNIREF evalue=9.0e-40 bit_score=167.0 identity=35.5 coverage=97.6261127596439)
seg (db=Seg db_id=seg from=125 to=136)
seg (db=Seg db_id=seg from=162 to=175)
ACD62_11_15

Not on your lists

20645..21322
DNA (678bp) protein (226aa)
seg (db=Seg db_id=seg from=206 to=222)
seg (db=Seg db_id=seg from=5 to=10)
TPR-like (db=superfamily db_id=SSF48452 from=62 to=193 evalue=3.4e-09)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=61 to=194 evalue=0.00074 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD62_11_16

Not on your lists

21522..22013
DNA (492bp) protein (164aa)
single-strand binding protein
seg (db=Seg db_id=seg from=140 to=151)
seg (db=Seg db_id=seg from=115 to=134)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=150 evalue=4.2e-55 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD62_11_17

Not on your lists

22166..22906
DNA (741bp) protein (247aa)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=5 to=242 evalue=3.4e-22)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=30 to=116 evalue=4.9e-08)
DUF676 (db=HMMPfam db_id=PF05057 from=27 to=116 evalue=1.3e-05 interpro_id=IPR007751 interpro_description=Protein of unknown function DUF676, hydrolase-like)
Uncharacterized protein {ECO:0000313|EMBL:EKD51010.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_18

Not on your lists

comp(22926..24341)
DNA (1416bp) protein (472aa)
ATPase
ATPase n=2 Tax=Clostridia RepID=A4XFP1_CALS8 (db=UNIREF evalue=9.0e-69 bit_score=265.0 identity=34.33 coverage=95.9745762711864)
seg (db=Seg db_id=seg from=412 to=426)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=247 evalue=8.2e-31)
ACD62_11_19

Not on your lists

comp(24489..24938)
DNA (450bp) protein (150aa)
DNA topoisomerase VI subunit A
seg (db=Seg db_id=seg from=137 to=146)
DNA topoisomerase IV, alpha subunit (db=superfamily db_id=SSF56726 from=2 to=149 evalue=3.5e-19 interpro_id=IPR002815 interpro_description=Spo11/DNA topoisomerase VI, subunit A GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524), Cellular Component: chromosome (GO:0005694), Biological Process: DNA metabolic process (GO:0006259))
no description (db=Gene3D db_id=G3DSA:3.40.1360.10 from=2 to=144 evalue=2.6e-18)
ACD62_11_20

Not on your lists

25127..25645
DNA (519bp) protein (173aa)
25127..25645 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD51004.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_21

Not on your lists


comp(25837..27564)
DNA (1728bp) protein (576aa)
Type II DNA topoisomerase VI, subunit B n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJB6_BDEBA (db=UNIREF evalue=0.0 bit_score=713.0 identity=61.62 coverage=93.0555555555556)
DNA topoisomerase VI subunit B (EC:5.99.1.3)
DNA topoisomerase VI subunit B (EC:5.99.1.3)
seg (db=Seg db_id=seg from=544 to=558)
ACD62_11_22

Not on your lists

27618..28550
DNA (933bp) protein (311aa)
metallophosphoesterase
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
seg (db=Seg db_id=seg from=34 to=44)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=78 to=309 evalue=6.3e-29)
ACD62_11_23

Not on your lists

28742..30058
DNA (1317bp) protein (439aa)
inositol-3-phosphate synthase
inositol-3-phosphate synthase
Inositol-3-phosphate synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGF9_CHIPD (db=UNIREF evalue=6.0e-157 bit_score=557.0 identity=62.93 coverage=93.1662870159453)
seg (db=Seg db_id=seg from=11 to=28)
ACD62_11_24

Not on your lists

30152..30502
DNA (351bp) protein (117aa)
DUF721 (db=HMMPfam db_id=PF05258 from=14 to=100 evalue=3.6e-20 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721)
Uncharacterized protein {ECO:0000313|EMBL:EKD51008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_11_25

Not on your lists

30474..32330
DNA (1857bp) protein (619aa)
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5)
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5)
Aldehyde ferredoxin oxidoreductase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0V0_DESOH (db=UNIREF evalue=0.0 bit_score=770.0 identity=60.26 coverage=99.5153473344103)
seg (db=Seg db_id=seg from=36 to=46)
ACD62_11_26
bacterium UASB270, Bacteria

Not on your lists

32468..33319
DNA (852bp) protein (284aa)
Dihydroorotate dehydrogenase/oxidoreductase, FAD-binding protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3E6_9GAMM (db=UNIREF evalue=2.0e-69 bit_score=266.0 identity=50.93 coverage=93.6619718309859)
dihydroorotate dehydrogenase family protein
seg (db=Seg db_id=seg from=270 to=280)
FMN-linked oxidoreductases (db=superfamily db_id=SSF51395 from=7 to=267 evalue=1.0e-54)
ACD62_11_27

Not on your lists

33354..34103
DNA (750bp) protein (250aa)
Dihydroorotate dehydrogenase/oxidoreductase, FAD-binding n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTH8_9GAMM (db=UNIREF evalue=5.0e-48 bit_score=194.0 identity=39.83 coverage=93.6)
dihydroorotate dehydrogenase electron transfer subunit
Cytochrome-c3 hydrogenase, gamma subunit (db=HMMPIR db_id=PIRSF006816 from=14 to=249 evalue=1.5e-37 interpro_id=IPR012165 interpro_description=Cytochrome-c3 hydrogenase, gamma subunit GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: FAD binding (GO:0050660), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
Ferredoxin reductase-like, C-terminal NADP-linked domain (db=superfamily db_id=SSF52343 from=99 to=249 evalue=1.0e-24)
ACD62_11_28

Not on your lists

34224..34835
DNA (612bp) protein (204aa)
membrane protein DedA
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
Displaying 28 items

View Taxonomy