ggKbase home page

ACD62_59

Alias: ACD62_107315.32970.13

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_59_1

Not on your lists


112..2211
DNA (2100bp) protein (700aa)
pnp; polynucleotide phosphorylase/polyadenylase
pnp; polynucleotide phosphorylase/polyadenylase
Polyribonucleotide nucleotidyltransferase n=1 Tax=Geobacter metallireducens GS-15 RepID=PNP_GEOMG (db=UNIREF evalue=0.0 bit_score=726.0 identity=55.28 coverage=98.1428571428571)
seg (db=Seg db_id=seg from=173 to=186)
ACD62_59_2

Not on your lists

comp(2908..3591)
DNA (684bp) protein (228aa)
seg (db=Seg db_id=seg from=161 to=171)
Uncharacterized protein {ECO:0000313|EMBL:EKD52410.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_3

Not on your lists

4269..5054
DNA (786bp) protein (262aa)
Dihydropteroate synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KC61_ELUMP (db=UNIREF evalue=3.0e-44 bit_score=182.0 identity=41.96 coverage=93.5114503816794)
dihydropteroate synthase (EC:2.5.1.15)
DHPS: dihydropteroate synthase (db=HMMTigr db_id=TIGR01496 from=1 to=259 evalue=1.4e-73 interpro_id=IPR006390 interpro_description=Dihydropteroate synthase GO=Molecular Function: dihydropteroate synthase activity (GO:0004156), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
DIHYDROPTEROATE SYNTHASE (db=HMMPanther db_id=PTHR20941:SF1 from=20 to=254 evalue=1.4e-70 interpro_id=IPR006390 interpro_description=Dihydropteroate synthase GO=Molecular Function: dihydropteroate synthase activity (GO:0004156), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD62_59_4

Not on your lists

5161..6510
DNA (1350bp) protein (450aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=GLMM_PELCD (db=UNIREF evalue=1.0e-133 bit_score=480.0 identity=53.12 coverage=99.1111111111111)
seg (db=Seg db_id=seg from=236 to=247)
involved in the pathway for bacterial cell-wall peptidoglycan and lipopolysaccharide biosyntheses, being an essential step in the pathway for UDP-N-acetylglucosamine biosynthesis Jill Banfield (11/15/12)
ACD62_59_5

Not on your lists

6624..7427
DNA (804bp) protein (268aa)
pdxJ; pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
pdxJ: pyridoxine 5'-phosphate synthase (db=HMMTigr db_id=TIGR00559 from=6 to=258 evalue=4.3e-104 interpro_id=IPR004569 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyridoxine biosynthetic process (GO:0008615))
PdxJ (db=HMMPfam db_id=PF03740 from=6 to=257 evalue=3.4e-91 interpro_id=IPR004569 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyridoxine biosynthetic process (GO:0008615))
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=2 to=261 evalue=4.8e-83 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD62_59_6

Not on your lists

7466..7897
DNA (432bp) protein (144aa)
nucleotide-binding protein
UPF0079 (db=HMMPfam db_id=PF02367 from=13 to=131 evalue=8.3e-29 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=142 evalue=1.6e-26)
HI0065_YjeE: ATPase, YjeE family (db=HMMTigr db_id=TIGR00150 from=7 to=141 evalue=2.7e-20 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
ACD62_59_7

Not on your lists

7887..8906
DNA (1020bp) protein (340aa)
hypothetical protein
seg (db=Seg db_id=seg from=263 to=273)
alpha-helical ferredoxin (db=superfamily db_id=SSF46548 from=127 to=243 evalue=1.6e-17 interpro_id=IPR009051 interpro_description=Alpha-helical ferredoxin GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: iron-sulfur cluster binding (GO:0051536), Biological Process: oxidation reduction (GO:0055114))
DUF1730 (db=HMMPfam db_id=PF08331 from=57 to=128 evalue=3.0e-15 interpro_id=IPR013542 interpro_description=Domain of unknown function DUF1730)
ACD62_59_8

Not on your lists

8903..9601
DNA (699bp) protein (233aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
YceI-like (db=superfamily db_id=SSF101874 from=47 to=226 evalue=8.2e-06 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
YceI (db=HMMPfam db_id=PF04264 from=51 to=226 evalue=0.00026 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
no description (db=HMMSmart db_id=SM00867 from=52 to=227 evalue=0.0062 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
ACD62_59_9

Not on your lists

comp(9633..10805)
DNA (1173bp) protein (391aa)
seg (db=Seg db_id=seg from=132 to=139)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=18 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD52404.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_10

Not on your lists

comp(10802..11677)
DNA (876bp) protein (292aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIP9_FIBSS (db=UNIREF evalue=7.0e-35 bit_score=151.0 identity=31.58 coverage=90.0684931506849)
seg (db=Seg db_id=seg from=3 to=16)
Fsuc_second: hypothetical protein, TIGR02 (db=HMMTigr db_id=TIGR02147 from=13 to=285 evalue=1.3e-63 interpro_id=IPR011873 interpro_description=Conserved hypothetical protein CHP02147)
ACD62_59_11

Not on your lists

comp(11810..12583)
DNA (774bp) protein (258aa)
pentapeptide repeat-containing protein
seg (db=Seg db_id=seg from=48 to=62)
seg (db=Seg db_id=seg from=13 to=32)
seg (db=Seg db_id=seg from=117 to=128)
ACD62_59_12

Not on your lists

comp(12711..14201)
DNA (1491bp) protein (497aa)
coiled-coil (db=Coil db_id=coil from=341 to=365 evalue=NA)
seg (db=Seg db_id=seg from=79 to=99)
seg (db=Seg db_id=seg from=108 to=119)
seg (db=Seg db_id=seg from=139 to=150)
ACD62_59_13

Not on your lists

comp(14258..14542)
DNA (285bp) protein (95aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg (db=Seg db_id=seg from=36 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKD52408.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_14
unknown

Not on your lists

14804..16030
DNA (1227bp) protein (409aa)
14804..16030 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
ACD62_59_15

Not on your lists

16410..17993
DNA (1584bp) protein (528aa)
L-aspartate oxidase n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4Y6_PELCD (db=UNIREF evalue=2.0e-172 bit_score=609.0 identity=57.28 coverage=97.1590909090909)
nadB; L-aspartate oxidase
nadB; L-aspartate oxidase
coiled-coil (db=Coil db_id=coil from=447 to=475 evalue=NA)
ACD62_59_16

Not on your lists

18098..19366
DNA (1269bp) protein (423aa)
18098..19366 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD52389.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_17

Not on your lists

19366..19920
DNA (555bp) protein (185aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD52390.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_18

Not on your lists

19932..20354
DNA (423bp) protein (141aa)
hypothetical protein (db=KEGG evalue=4.0e-13 bit_score=77.0 identity=39.62 coverage=73.0496453900709)
Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QQY5_PERMH (db=UNIREF evalue=4.0e-13 bit_score=77.0 identity=39.62 coverage=73.0496453900709)
hypoth_ymh: conserved hypothetical protein (db=HMMTigr db_id=TIGR02391 from=20 to=135 evalue=1.9e-13 interpro_id=IPR012654 interpro_description=Conserved hypothetical protein CHP02391)
Hypoth_Ymh (db=HMMPfam db_id=PF09509 from=20 to=127 evalue=4.4e-11 interpro_id=IPR012654 interpro_description=Conserved hypothetical protein CHP02391)
ACD62_59_19

Not on your lists

20432..20923
DNA (492bp) protein (164aa)
repressor protein
Uncharacterized protein {ECO:0000313|EMBL:EKD52392.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
helix-TurN-helix domain protein alias=ACD11_12498.357805.29G0265,ACD11_12498.357805.29_265,ACD11_C00006G00265 id=2526 tax=ACD11 species=Methanobrevibacter ruminantium genus=Methanobrevibacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
ACD62_59_20

Not on your lists

20920..21294
DNA (375bp) protein (125aa)
coiled-coil (db=Coil db_id=coil from=9 to=37 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD52393.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_59_21

Not on your lists

21472..22056
DNA (585bp) protein (195aa)
Thymidine kinase n=6 Tax=Legionella pneumophila RepID=KITH_LEGPA (db=UNIREF evalue=3.0e-57 bit_score=224.0 identity=54.87 coverage=98.974358974359)
tdk; thymidine kinase (EC:2.7.1.21)
Thymidine kinase (db=HMMPIR db_id=PIRSF035805 from=1 to=194 evalue=2.3e-76 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
TK (db=HMMPfam db_id=PF00265 from=3 to=187 evalue=4.7e-48 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
ACD62_59_22

Not on your lists

22131..23324
DNA (1194bp) protein (398aa)
vitamin K epoxide reductase
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
seg (db=Seg db_id=seg from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
ACD62_59_23

Not on your lists

23441..24505
DNA (1065bp) protein (355aa)
D-alanine--D-alanine ligase A n=4 Tax=Xanthomonas campestris pv. campestris RepID=DDLA_XANCP (db=UNIREF evalue=4.0e-93 bit_score=345.0 identity=48.16 coverage=96.6197183098592)
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=98 to=109 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD62_59_24

Not on your lists

comp(24626..26113)
DNA (1488bp) protein (496aa)
Lysyl-tRNA synthetase n=1 Tax=Geobacter sulfurreducens RepID=Q74AT0_GEOSL (db=UNIREF evalue=7.0e-166 bit_score=587.0 identity=59.79 coverage=96.3709677419355)
lysS; lysyl-tRNA synthetase
lysS; lysyl-tRNA synthetase
lysS_bact: lysyl-tRNA synthetase (db=HMMTigr db_id=TIGR00499 from=3 to=495 evalue=1.7e-205 interpro_id=IPR002313 interpro_description=Lysyl-tRNA synthetase, class II GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: lysine-tRNA ligase activity (GO:0004824), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: lysyl-tRNA aminoacylation (GO:0006430))
ACD62_59_25

Not on your lists

comp(26329..27381)
DNA (1053bp) protein (351aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
seg (db=Seg db_id=seg from=16 to=23)
seg (db=Seg db_id=seg from=65 to=77)
ACD62_59_26
unknown

Not on your lists

comp(27673..27813)
DNA (141bp) protein (47aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
MttA_Hcf106 (db=HMMPfam db_id=PF02416 from=9 to=38 evalue=1.3e-05 interpro_id=IPR003369 interpro_description=Bacterial sec-independent translocation protein mttA/Hcf106 GO=Molecular Function: protein transporter activity (GO:0008565), Biological Process: protein transport (GO:0015031))
ACD62_59_27

Not on your lists

28132..29259
DNA (1128bp) protein (376aa)
histidine kinase/GAF/PAS domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
no description (db=Gene3D db_id=G3DSA:3.30.450.20 from=240 to=370 evalue=4.8e-32)
ACD62_59_28

Not on your lists

comp(29334..29837)
DNA (504bp) protein (168aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD52386.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FKP6_DESAA
ACD62_59_29

Not on your lists

comp(30006..30824)
DNA (819bp) protein (273aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKP5_DESAA (db=UNIREF evalue=7.0e-80 bit_score=300.0 identity=54.78 coverage=98.1684981684982)
short-chain dehydrogenase/reductase SDR
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=272 evalue=6.5e-62)
RETINAL SHORT CHAIN DEHYDROGENASE REDUCTASE (db=HMMPanther db_id=PTHR19410:SF36 from=2 to=233 evalue=9.9e-61)
ACD62_59_30

Not on your lists

comp(30821..31381)
DNA (561bp) protein (187aa)
putative TetR family transcriptional regulator
TetR_N (db=HMMPfam db_id=PF00440 from=3 to=44 evalue=4.7e-14 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Homeodomain-like (db=superfamily db_id=SSF46689 from=1 to=61 evalue=5.4e-10 interpro_id=IPR009057 interpro_description=Homeodomain-like)
no description (db=Gene3D db_id=G3DSA:1.10.10.60 from=3 to=46 evalue=1.9e-07 interpro_id=IPR012287 interpro_description=Homeodomain-related GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription (GO:0045449))
Displaying items 1-30 of 32 in total

View Taxonomy