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ACD62_117

Alias: ACD62_28668.27147.15

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_117_1

Not on your lists

comp(135..260)
DNA (126bp) protein (42aa)
seg (db=Seg db_id=seg from=3 to=9)
Uncharacterized protein {ECO:0000313|EMBL:EKD51384.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
GTCTCAATCCCTTCACGCAGGGAACTGGTCTGAAT CRISPR repeat Jill Banfield (11/15/12)
ACD62_117_2

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comp(334..633)
DNA (300bp) protein (100aa)
CRISPR-associated protein Cas2
TTP0101/SSO1404-like (db=superfamily db_id=SSF143430 from=4 to=85 evalue=7.1e-22)
CRISPR_Cas2 (db=HMMPfam db_id=PF09827 from=9 to=81 evalue=1.7e-20 interpro_id=IPR019199 interpro_description=Virulence-associated protein D / CRISPR associated protein Cas2)
cas2: CRISPR-associated endoribonuclease Cas (db=HMMTigr db_id=TIGR01573 from=8 to=97 evalue=1.2e-08 interpro_id=IPR021127 interpro_description=CRISPR associated protein Cas2)
ACD62_117_3

Not on your lists

comp(630..929)
DNA (300bp) protein (100aa)
cytoplasmic protein
CRISPR_Cas2 (db=HMMPfam db_id=PF09827 from=1 to=83 evalue=3.0e-18 interpro_id=IPR019199 interpro_description=Virulence-associated protein D / CRISPR associated protein Cas2)
TTP0101/SSO1404-like (db=superfamily db_id=SSF143430 from=1 to=88 evalue=4.5e-18)
cas2: CRISPR-associated endoribonuclease Cas (db=HMMTigr db_id=TIGR01573 from=1 to=99 evalue=1.3e-16 interpro_id=IPR021127 interpro_description=CRISPR associated protein Cas2)
ACD62_117_4

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comp(926..2110)
DNA (1185bp) protein (395aa)
hypothetical protein
seg (db=Seg db_id=seg from=179 to=184)
coiled-coil (db=Coil db_id=coil from=123 to=151 evalue=NA)
Cas_Cas1 (db=HMMPfam db_id=PF01867 from=3 to=267 evalue=5.3e-81 interpro_id=IPR002729 interpro_description=CRISPR-associated protein Cas1)
ACD62_117_5

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comp(2111..2938)
DNA (828bp) protein (276aa)
hypothetical protein (db=KEGG evalue=1.0e-17 bit_score=94.0 identity=27.53 coverage=91.6666666666667)
DUF2276 (db=HMMPfam db_id=PF10040 from=152 to=271 evalue=3.4e-07 interpro_id=IPR019267 interpro_description=Protein of unknown function DUF2276)
Uncharacterized protein {ECO:0000313|EMBL:EKD51388.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens (strain MBEL55E) RepID=Q65S11_MANSM
ACD62_117_6

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comp(2931..4091)
DNA (1161bp) protein (387aa)
CRISPR-associated protein
CRISPR-associated protein, TIGR02710 family n=1 Tax=Ammonifex degensii KC4 RepID=C9RCY7_AMMDK (db=UNIREF evalue=1.0e-23 bit_score=114.0 identity=29.16 coverage=89.405684754522)
Cas_Cas02710 (db=HMMPfam db_id=PF09670 from=23 to=300 evalue=5.3e-36)
TIGR02710: CRISPR-associated protein, TIGR0 (db=HMMTigr db_id=TIGR02710 from=16 to=368 evalue=3.6e-12 interpro_id=IPR014082 interpro_description=CRISPR-associated protein, Cas02710)
Csx1 Jill Banfield (11/15/12)
ACD62_117_7
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4104..5654)
DNA (1551bp) protein (517aa)
recG1; ATP-dependent DNA helicase
recG1; ATP-dependent DNA helicase
Putative transcriptional regulator n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT26_ACIC1 (db=UNIREF evalue=1.0e-83 bit_score=314.0 identity=42.07 coverage=74.2746615087041)
seg (db=Seg db_id=seg from=332 to=347)
ACD62_117_8

Not on your lists

comp(5668..6798)
DNA (1131bp) protein (377aa)
cytoplasmic protein
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQX1_SYNAS (db=UNIREF evalue=2.0e-55 bit_score=219.0 identity=42.11 coverage=71.6180371352785)
coiled-coil (db=Coil db_id=coil from=282 to=303 evalue=NA)
cas_TM1791_cmr6: CRISPR-associated RA (db=HMMTigr db_id=TIGR01898 from=87 to=271 evalue=1.7e-58 interpro_id=IPR010172 interpro_description=CRISPR-associated protein, TM1791)
ACD62_117_9

Not on your lists

comp(6801..7211)
DNA (411bp) protein (137aa)
Cmr5 family CRISPR-associated protein
Cas_Cmr5 (db=HMMPfam db_id=PF09701 from=6 to=124 evalue=6.3e-23 interpro_id=IPR010160 interpro_description=CRISPR-associated protein, TM1791.1)
cas_Cmr5: CRISPR-associated protein, Cmr5 fa (db=HMMTigr db_id=TIGR01881 from=4 to=128 evalue=1.0e-11 interpro_id=IPR010160 interpro_description=CRISPR-associated protein, TM1791.1)
Uncharacterized protein {ECO:0000313|EMBL:EKD51382.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Jill Banfield (11/15/12)
ACD62_117_10

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comp(7208..7987)
DNA (780bp) protein (260aa)
hypothetical protein
Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQW3_SYNAS (db=UNIREF evalue=9.0e-61 bit_score=236.0 identity=47.14 coverage=99.2307692307692)
coiled-coil (db=Coil db_id=coil from=20 to=41 evalue=NA)
cas_RAMP_Cmr4: CRISPR-associated RAMP p (db=HMMTigr db_id=TIGR02580 from=1 to=250 evalue=7.3e-29 interpro_id=IPR013410 interpro_description=CRISPR-associated RAMP Cmr4)
ACD62_117_11

Not on your lists

comp(8121..9113)
DNA (993bp) protein (331aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQW4_SYNAS (db=UNIREF evalue=2.0e-71 bit_score=272.0 identity=41.79 coverage=95.4682779456193)
cytoplasmic protein
Cas_Cmr3 (db=HMMPfam db_id=PF09700 from=5 to=318 evalue=4.4e-39 interpro_id=IPR019117 interpro_description=CRISPR-associated protein, Cmr3)
Uncharacterized protein {ECO:0000313|EMBL:EKD51375.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_12

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comp(9106..11868)
DNA (2763bp) protein (921aa)
Crm2 family CRISPR-associated protein
Crm2 family CRISPR-associated protein
Hydrolase of the HD superfamily n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQW5_SYNAS (db=UNIREF evalue=0.0 bit_score=787.0 identity=46.88 coverage=97.7198697068404)
seg (db=Seg db_id=seg from=154 to=171)
ACD62_117_13

Not on your lists

comp(11858..12808)
DNA (951bp) protein (317aa)
cytoplasmic protein
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQW6_SYNAS (db=UNIREF evalue=6.0e-42 bit_score=174.0 identity=37.5 coverage=86.4353312302839)
cas_TM1795_cmr1: CRISPR-associated RA (db=HMMTigr db_id=TIGR01894 from=18 to=174 evalue=7.3e-17 interpro_id=IPR007522 interpro_description=CRISPR-associated protein TM1795 family, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKD51377.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_14

Not on your lists

13243..13704
DNA (462bp) protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=4 to=18)
seg (db=Seg db_id=seg from=69 to=75)
Uncharacterized protein {ECO:0000313|EMBL:EKD51378.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_15

Not on your lists

13856..14893
DNA (1038bp) protein (346aa)
phosphofructokinase, pyrophosphate dependent (EC:2.7.1.11)
phosphofructokinase, pyrophosphate dependent (EC:2.7.1.11)
Pyrophosphate-dependent phosphofructokinase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FP89_METHJ (db=UNIREF evalue=6.0e-102 bit_score=374.0 identity=56.73 coverage=97.9768786127168)
seg (db=Seg db_id=seg from=176 to=191)
ACD62_117_16

Not on your lists

comp(14974..15210)
DNA (237bp) protein (79aa)
14974..15210 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51380.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_17

Not on your lists

comp(15215..16021)
DNA (807bp) protein (269aa)
ErfK/YbiS/YcfS/YnhG family protein
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2V6_9BACT (db=UNIREF evalue=8.0e-14 bit_score=81.3 identity=32.47 coverage=68.7732342007435)
seg (db=Seg db_id=seg from=120 to=131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD62_117_18

Not on your lists

comp(16237..17637)
DNA (1401bp) protein (467aa)
UDP-N-acetylglucosamine pyrophosphorylase
UDP-N-acetylglucosamine pyrophosphorylase
Bifunctional protein glmU n=1 Tax=bacterium S5 RepID=D3BZM5_9BACT (db=UNIREF evalue=1.0e-97 bit_score=360.0 identity=44.16 coverage=98.2869379014989)
seg (db=Seg db_id=seg from=415 to=438)
ACD62_117_19

Not on your lists

comp(18168..18962)
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR
seg (db=Seg db_id=seg from=137 to=150)
ADH_SHORT (db=PatternScan db_id=PS00061 from=138 to=166 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=2 to=233 evalue=8.5e-84 interpro_id=IPR002198 interpro_description=Short-chain dehydrogenase/reductase SDR GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491))
ACD62_117_20

Not on your lists

comp(18959..20413)
DNA (1455bp) protein (485aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1U7_SLAHD (db=UNIREF evalue=2.0e-86 bit_score=323.0 identity=39.38 coverage=90.7216494845361)
seg (db=Seg db_id=seg from=258 to=269)
ACD62_117_21

Not on your lists

comp(20569..21261)
DNA (693bp) protein (231aa)
seg (db=Seg db_id=seg from=162 to=174)
seg (db=Seg db_id=seg from=140 to=159)
seg (db=Seg db_id=seg from=64 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=45)
ACD62_117_22

Not on your lists

21291..21854
DNA (564bp) protein (188aa)
nadD; Nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=4 to=182 evalue=1.5e-41 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=3 to=184 evalue=5.9e-40)
TIGR00482: nicotinate (nicotinamide) nuc (db=HMMTigr db_id=TIGR00482 from=10 to=182 evalue=8.3e-37 interpro_id=IPR005248 interpro_description=Probable nicotinate-nucleotide adenylyltransferase GO=Biological Process: NAD biosynthetic process (GO:0009435), Molecular Function: nucleotidyltransferase activity (GO:0016779))
ACD62_117_23

Not on your lists

comp(21762..22001)
DNA (240bp) protein (80aa)
seg (db=Seg db_id=seg from=2 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD51369.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_24

Not on your lists

comp(21946..22278)
DNA (333bp) protein (111aa)
FmdB family regulatory protein
seg (db=Seg db_id=seg from=66 to=84)
seg (db=Seg db_id=seg from=88 to=110)
CxxC_CxxC_SSSS: putative regulatory pr (db=HMMTigr db_id=TIGR02605 from=1 to=52 evalue=8.8e-25 interpro_id=IPR013429 interpro_description=Regulatory protein, FmdB, putative)
ACD62_117_25

Not on your lists

22374..22952
DNA (579bp) protein (193aa)
Shikimate kinase n=1 Tax=Persephonella marina EX-H1 RepID=AROK_PERMH (db=UNIREF evalue=3.0e-29 bit_score=131.0 identity=42.94 coverage=83.419689119171)
hypothetical protein
seg (db=Seg db_id=seg from=4 to=18)
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=81 to=106 evalue=0.0 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
ACD62_117_26

Not on your lists

comp(22930..23028)
DNA (99bp) protein (33aa)
22930..23028 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD51372.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_27

Not on your lists

comp(23050..23220)
DNA (171bp) protein (57aa)
23050..23220 - (rbs_motif=AGGAG/GGAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD51373.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_117_28

Not on your lists

23413..24045
DNA (633bp) protein (211aa)
aroB; 3-dehydroquinate synthase
3-DEHYDROQUINATE SYNTHASE (db=HMMPanther db_id=PTHR21090:SF1 from=3 to=207 evalue=2.3e-58 interpro_id=IPR002658 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
AROM/DEHYDROQUINATE SYNTHASE (db=HMMPanther db_id=PTHR21090 from=3 to=207 evalue=2.3e-58)
DHQ_synthase (db=HMMPfam db_id=PF01761 from=2 to=181 evalue=1.4e-56 interpro_id=IPR002658 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
ACD62_117_29

Not on your lists

24361..24549
DNA (189bp) protein (63aa)
aroQ; 3-dehydroquinate dehydratase
Type II 3-dehydroquinate dehydratase (db=superfamily db_id=SSF52304 from=1 to=53 evalue=5.1e-13 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
DHquinase_II (db=HMMPfam db_id=PF01220 from=2 to=48 evalue=8.9e-13 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR21272 from=4 to=58 evalue=3.5e-11 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
ACD62_117_30

Not on your lists

comp(24708..24929)
DNA (222bp) protein (74aa)
24708..24929 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD51363.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 33 in total

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