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ACD62_125

Alias: ACD62_66284.20626.12

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_125_1

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comp(62..610)
DNA (549bp) protein (183aa)
ubiX; 3-polyprenyl-4-hydroxybenzoate decarboxylase
ubiX_pad: polyprenyl P-hydroxybenzoate and p (db=HMMTigr db_id=TIGR00421 from=3 to=181 evalue=1.0e-59 interpro_id=IPR004507 interpro_description=Phenylacrylic acid decarboxylase GO=Molecular Function: carboxy-lyase activity (GO:0016831))
no description (db=Gene3D db_id=G3DSA:3.40.50.1950 from=2 to=182 evalue=3.7e-57 interpro_id=IPR003382 interpro_description=Flavoprotein GO=Molecular Function: catalytic activity (GO:0003824))
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (db=superfamily db_id=SSF52507 from=2 to=182 evalue=1.9e-52 interpro_id=IPR003382 interpro_description=Flavoprotein GO=Molecular Function: catalytic activity (GO:0003824))
ACD62_125_2

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851..1111
DNA (261bp) protein (87aa)
851..1111 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD50445.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_125_3

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1133..1363
DNA (231bp) protein (77aa)
1133..1363 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD50446.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_125_4

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comp(1393..1746)
DNA (354bp) protein (118aa)
7-cyano-7-deazaguanine reductase
NADPH-dependent 7-cyano-7-deazaguanine reductase n=4 Tax=Anaeromyxobacter RepID=QUEF_ANAD2 (db=UNIREF evalue=1.0e-39 bit_score=164.0 identity=70.64 coverage=90.6779661016949)
QueF-II: 7-cyano-7-deazaguanine reductase (db=HMMTigr db_id=TIGR03139 from=3 to=116 evalue=2.7e-72 interpro_id=IPR016856 interpro_description=Nitrile oxidoreductase, NADPH-dependent, QueF GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor (GO:0046857), Biological Process: oxidation reduction (GO:0055114))
NADPH-dependent nitrile oxidoreductase QueF (db=HMMPIR db_id=PIRSF027377 from=1 to=116 evalue=2.7e-66 interpro_id=IPR016856 interpro_description=Nitrile oxidoreductase, NADPH-dependent, QueF GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor (GO:0046857), Biological Process: oxidation reduction (GO:0055114))
ACD62_125_5

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1917..4178
DNA (2262bp) protein (754aa)
seg (db=Seg db_id=seg from=13 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=725 to=747)
transmembrane_regions (db=TMHMM db_id=tmhmm from=568 to=590)
transmembrane_regions (db=TMHMM db_id=tmhmm from=538 to=555)
ACD62_125_6

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4175..6175
DNA (2001bp) protein (667aa)
seg (db=Seg db_id=seg from=536 to=548)
seg (db=Seg db_id=seg from=469 to=498)
seg (db=Seg db_id=seg from=7 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=614 to=633)
ACD62_125_7

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6156..6719
DNA (564bp) protein (188aa)
guanylate kinase (EC:2.7.4.8)
seg (db=Seg db_id=seg from=100 to=105)
GUANYLATE_KINASE_1 (db=PatternScan db_id=PS00856 from=41 to=58 evalue=0.0 interpro_id=IPR020590 interpro_description=Guanylate kinase, conserved site)
guanyl_kin: guanylate kinase (db=HMMTigr db_id=TIGR03263 from=8 to=186 evalue=4.7e-89 interpro_id=IPR017665 interpro_description=Guanylate kinase, sub-group GO=Molecular Function: guanylate kinase activity (GO:0004385), Biological Process: purine nucleotide metabolic process (GO:0006163))
ACD62_125_8

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6894..9041
DNA (2148bp) protein (716aa)
relA; GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
relA; GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
GTP diphosphokinase n=2 Tax=Sorangium cellulosum RepID=A9GX15_SORC5 (db=UNIREF evalue=0.0 bit_score=686.0 identity=45.37 coverage=99.5810055865922)
seg (db=Seg db_id=seg from=178 to=191)
ACD62_125_9
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9052..9723
DNA (672bp) protein (224aa)
coproporphyrinogen III oxidase
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=29 to=223 evalue=4.8e-31)
HemN_C (db=HMMPfam db_id=PF06969 from=85 to=213 evalue=3.2e-18 interpro_id=IPR010723 interpro_description=HemN, C-terminal GO=Molecular Function: coproporphyrinogen oxidase activity (GO:0004109), Cellular Component: cytoplasm (GO:0005737), Biological Process: porphyrin biosynthetic process (GO:0006779), Biological Process: oxidation reduction (GO:0055114))
COPROPORPHYRINIGEN III OXIDASE (db=HMMPanther db_id=PTHR13932 from=29 to=223 evalue=4.7e-14)
ACD62_125_10

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9966..10328
DNA (363bp) protein (121aa)
hypothetical protein
UPF0102 (db=HMMPfam db_id=PF02021 from=11 to=92 evalue=7.3e-27 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=9 to=113 evalue=3.9e-19 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
TIGR00252: conserved hypothetical protein T (db=HMMTigr db_id=TIGR00252 from=1 to=119 evalue=9.1e-10 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
ACD62_125_11

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10371..12158
DNA (1788bp) protein (596aa)
Long-chain fatty-acid-CoA ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIK6_BDEBA (db=UNIREF evalue=4.0e-141 bit_score=505.0 identity=44.37 coverage=96.1409395973154)
long-chain fatty-acid-CoA ligase
long-chain fatty-acid-CoA ligase
AMP_BINDING (db=PatternScan db_id=PS00455 from=180 to=191 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
ACD62_125_12

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12322..12783
DNA (462bp) protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
DUF2752 (db=HMMPfam db_id=PF10825 from=57 to=103 evalue=2.5e-15 interpro_id=IPR021215 interpro_description=Protein of unknown function DUF2752)
ACD62_125_13

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12872..13192
DNA (321bp) protein (107aa)
sterol-binding domain-containing protein
SCP2 (db=HMMPfam db_id=PF02036 from=10 to=106 evalue=2.0e-24 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=1 to=106 evalue=2.2e-23 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
no description (db=Gene3D db_id=G3DSA:3.30.1050.10 from=1 to=106 evalue=1.9e-21)
ACD62_125_14

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13307..14260
DNA (954bp) protein (318aa)
LAO/AO transport system ATPase
LAO/AO transport system ATPase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L255_9BACT (db=UNIREF evalue=1.0e-74 bit_score=283.0 identity=47.47 coverage=92.7672955974843)
lao: LAO/AO transport system ATPase (db=HMMTigr db_id=TIGR00750 from=15 to=308 evalue=3.4e-103 interpro_id=IPR005129 interpro_description=ArgK protein)
ArgK (db=HMMPfam db_id=PF03308 from=20 to=277 evalue=7.5e-93 interpro_id=IPR005129 interpro_description=ArgK protein)
ACD62_125_15

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14551..14829
DNA (279bp) protein (93aa)
putative PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] (db=KEGG evalue=3.0e-08 bit_score=60.8 identity=43.55 coverage=61.2903225806452)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=35 to=83 evalue=9.8e-16 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=34 to=84 evalue=4.1e-06 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
Uncharacterized protein {ECO:0000313|EMBL:EKD50435.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_125_16

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comp(14935..16770)
DNA (1836bp) protein (612aa)
amino acid/polyamine/organocation transporter, APC superfamily
amino acid/polyamine/organocation transporter, APC superfamily
Amino acid transporter-like n=2 Tax=Hydrogenobaculum RepID=B4U8Z6_HYDS0 (db=UNIREF evalue=9.0e-118 bit_score=428.0 identity=41.01 coverage=97.875816993464)
seg (db=Seg db_id=seg from=428 to=442)
ACD62_125_17

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16849..17865
DNA (1017bp) protein (339aa)
ilvE; branched-chain amino acid aminotransferase
ilvE; branched-chain amino acid aminotransferase
Branched-chain amino acid aminotransferase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H9B4_ANADF (db=UNIREF evalue=5.0e-95 bit_score=351.0 identity=51.49 coverage=88.7905604719764)
AA_TRANSFER_CLASS_4 (db=PatternScan db_id=PS00770 from=225 to=254 evalue=0.0 interpro_id=IPR018300 interpro_description=Aminotransferase, class IV, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD62_125_18

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18022..19707
DNA (1686bp) protein (562aa)
ABC transporter
ABC transporter
ABC transporter ATP-binding protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL02_9BACT (db=UNIREF evalue=0.0 bit_score=781.0 identity=69.84 coverage=98.576512455516)
seg (db=Seg db_id=seg from=182 to=195)
ACD62_125_19

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19859..20095
DNA (237bp) protein (79aa)
19859..20095 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD50439.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_125_20

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comp(20146..20385)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NN08_9DELT (db=UNIREF evalue=7.0e-20 bit_score=99.4 identity=60.56 coverage=87.5)
helix-turn-helix protein CopG
Uncharacterized protein {ECO:0000313|EMBL:EKD50440.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 20 items

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