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ACD62_139

Alias: ACD62_4546.9434.19

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_139_1

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comp(3..122)
DNA (120bp) protein (40aa)
seg (db=Seg db_id=seg from=13 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKD50895.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_139_2

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comp(154..681)
DNA (528bp) protein (176aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
ACD62_139_3

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833..1738
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZI0_DESAD (db=UNIREF evalue=1.0e-07 bit_score=60.8 identity=26.37 coverage=61.9205298013245)
hypothetical protein (db=KEGG evalue=1.0e-07 bit_score=60.8 identity=26.37 coverage=61.9205298013245)
seg (db=Seg db_id=seg from=262 to=276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
ACD62_139_4

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1745..2641
DNA (897bp) protein (299aa)
NagC; transcriptional regulator
ROK family protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVI8_9PROT (db=UNIREF evalue=1.0e-43 bit_score=180.0 identity=36.88 coverage=96.3210702341137)
ROK (db=PatternScan db_id=PS01125 from=137 to=164 evalue=0.0 interpro_id=IPR000600 interpro_description=ROK)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=69 to=298 evalue=3.2e-60)
ACD62_139_5

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comp(2667..2804)
DNA (138bp) protein (46aa)
2667..2804 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD50899.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_139_6

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comp(2812..5865)
DNA (3054bp) protein (1018aa)
serine/threonine protein kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=409)
PROTEIN_KINASE_ST (db=PatternScan db_id=PS00108 from=221 to=233 evalue=0.0 interpro_id=IPR008271 interpro_description=Serine/threonine-protein kinase, active site GO=Molecular Function: protein serine/threonine kinase activity (GO:0004674), Biological Process: protein amino acid phosphorylation (GO:0006468))
PROTEIN_KINASE_ATP (db=PatternScan db_id=PS00107 from=78 to=105 evalue=0.0 interpro_id=IPR017441 interpro_description=Protein kinase, ATP binding site GO=Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468))
ACD62_139_7

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comp(5858..6466)
DNA (609bp) protein (203aa)
ECF subfamily RNA polymerase sigma-24 subunit
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=21 to=199 evalue=1.6e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=110 to=201 evalue=8.6e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=6 to=93 evalue=5.3e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD62_139_8

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6579..7025
DNA (447bp) protein (149aa)
6579..7025 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD50902.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_139_9

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7101..7262
DNA (162bp) protein (54aa)
hypothetical protein
50S ribosomal protein L5 {ECO:0000313|EMBL:EKD50903.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=5 Tax=Firmicutes RepID=N9WZC0_CLOIN
ACD62_139_10

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comp(7280..7717)
DNA (438bp) protein (146aa)
hypothetical protein
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=137 evalue=1.3e-19)
Mtu_PIN_fam: Mycobacterium tuberculosis P (db=HMMTigr db_id=TIGR00028 from=1 to=145 evalue=6.9e-15 interpro_id=IPR006226 interpro_description=Conserved hyprothetical protein CHP00028)
PIN (db=HMMPfam db_id=PF01850 from=4 to=142 evalue=3.6e-08 interpro_id=IPR002716 interpro_description=PilT protein, N-terminal)
ACD62_139_11

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comp(7714..7956)
DNA (243bp) protein (81aa)
coiled-coil (db=Coil db_id=coil from=15 to=36 evalue=NA)
seg (db=Seg db_id=seg from=29 to=46)
Uncharacterized protein {ECO:0000313|EMBL:EKD50905.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_139_12

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comp(7985..9391)
DNA (1407bp) protein (469aa)
glutamyl-tRNA synthetase
glutamyl-tRNA synthetase
Glutamyl-tRNA synthetase n=1 Tax=Geobacter sulfurreducens RepID=SYE_GEOSL (db=UNIREF evalue=5.0e-131 bit_score=471.0 identity=49.67 coverage=96.8017057569296)
seg (db=Seg db_id=seg from=165 to=174)
Displaying 12 items

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