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ACD62_214

Alias: ACD62_102097.18895.13

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD62_214_1

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comp(2..388)
DNA (387bp) protein (129aa)
2..388 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD52470.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_2

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comp(385..537)
DNA (153bp) protein (51aa)
385..537 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD52471.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_3

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551..3670
DNA (3120bp) protein (1040aa)
hypothetical protein
seg (db=Seg db_id=seg from=747 to=758)
seg (db=Seg db_id=seg from=162 to=180)
seg (db=Seg db_id=seg from=884 to=897)
ACD62_214_4

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3769..4203
DNA (435bp) protein (145aa)
3769..4203 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD52473.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_5

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4483..5991
DNA (1509bp) protein (503aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MJU4_9BACT (db=UNIREF evalue=2.0e-24 bit_score=117.0 identity=32.95 coverage=49.1053677932406)
seg (db=Seg db_id=seg from=152 to=163)
delta_60_rpt: delta-60 repeat domain (db=HMMTigr db_id=TIGR02608 from=231 to=286 evalue=3.4e-11 interpro_id=IPR013431 interpro_description=Delta-60 repeat)
ACD62_214_6

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6411..6644
DNA (234bp) protein (78aa)
hypothetical protein
seg (db=Seg db_id=seg from=57 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
ACD62_214_7

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comp(6701..7051)
DNA (351bp) protein (117aa)
chromosomal replication initiation protein
DNAA (db=PatternScan db_id=PS01008 from=74 to=93 evalue=0.0 interpro_id=IPR018312 interpro_description=Chromosomal replication control, initiator DnaA, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275))
no description (db=HMMSmart db_id=SM00760 from=24 to=93 evalue=3.0e-38 interpro_id=IPR013159 interpro_description=Chromosomal replication initiator, DnaA C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275), Molecular Function: sequence-specific DNA binding (GO:0043565))
TrpR-like (db=superfamily db_id=SSF48295 from=10 to=114 evalue=1.1e-32 interpro_id=IPR010921 interpro_description=Trp repressor/replication initiator GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD62_214_8
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7023..8135)
DNA (1113bp) protein (371aa)
chromosome replication initiator DnaA
seg (db=Seg db_id=seg from=333 to=343)
seg (db=Seg db_id=seg from=92 to=103)
seg (db=Seg db_id=seg from=105 to=119)
ACD62_214_9

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8813..9127
DNA (315bp) protein (105aa)
RIBONUCLEASE_P (db=PatternScan db_id=PS00648 from=47 to=61 evalue=0.0 interpro_id=IPR020539 interpro_description=Ribonuclease P, conserved site)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=2 to=103 evalue=4.8e-12 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=6 to=81 evalue=4.1e-11 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=6 to=103 evalue=5.4e-09 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD62_214_10

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9492..11189
DNA (1698bp) protein (566aa)
yidC; preprotein translocase subunit YidC
seg (db=Seg db_id=seg from=505 to=517)
seg (db=Seg db_id=seg from=27 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=433 to=455)
ACD62_214_11

Not on your lists

11193..11606
DNA (414bp) protein (138aa)
prfA3; peptide chain release factor 1
seg (db=Seg db_id=seg from=99 to=110)
seg (db=Seg db_id=seg from=119 to=131)
PEPTIDE CHAIN RELEASE FACTOR (db=HMMPanther db_id=PTHR11075 from=26 to=120 evalue=1.8e-26)
ACD62_214_12

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11596..11958
DNA (363bp) protein (121aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
seg (db=Seg db_id=seg from=39 to=49)
DivIC (db=HMMPfam db_id=PF04977 from=45 to=119 evalue=2.0e-11 interpro_id=IPR007060 interpro_description=Septum formation initiator GO=Biological Process: cell cycle (GO:0007049))
Uncharacterized protein {ECO:0000313|EMBL:EKD52466.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_13

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comp(11967..12461)
DNA (495bp) protein (165aa)
2-oxoacid:acceptor oxidoreductase subunit beta (EC:1.2.7.3)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=1 to=164 evalue=3.1e-14)
Uncharacterized protein {ECO:0000313|EMBL:EKD52467.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKX3_CHLTF
ACD62_214_14

Not on your lists

comp(13072..14985)
DNA (1914bp) protein (638aa)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoglutarate synthase subunit KorA n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AW38_9FLAO (db=UNIREF evalue=0.0 bit_score=714.0 identity=56.44 coverage=95.2978056426332)
OAFO_sf: 2-oxoacid:acceptor oxidoreductase, (db=HMMTigr db_id=TIGR03710 from=32 to=628 evalue=2.3e-276 interpro_id=IPR022367 interpro_description=2-oxoacid:acceptor oxidoreductase, alpha subunit)
ACD62_214_15

Not on your lists

15113..16192
DNA (1080bp) protein (360aa)
hypothetical protein
Putative aminotransferase n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PJV9_9PROT (db=UNIREF evalue=8.0e-53 bit_score=211.0 identity=34.77 coverage=95.0)
seg (db=Seg db_id=seg from=251 to=261)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=15 to=354 evalue=2.0e-64 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
ACD62_214_16

Not on your lists

comp(16185..16664)
DNA (480bp) protein (160aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
seg (db=Seg db_id=seg from=35 to=48)
Uncharacterized protein {ECO:0000313|EMBL:EKD52458.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_17

Not on your lists

comp(16686..17321)
DNA (636bp) protein (212aa)
seg (db=Seg db_id=seg from=157 to=169)
seg (db=Seg db_id=seg from=33 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
Uncharacterized protein {ECO:0000313|EMBL:EKD52459.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_18

Not on your lists

comp(17330..17974)
DNA (645bp) protein (215aa)
Probable transaldolase n=2 Tax=Geobacter RepID=TAL_GEOSF (db=UNIREF evalue=2.0e-83 bit_score=311.0 identity=69.16 coverage=99.0697674418605)
putative translaldolase (EC:2.2.1.2)
putative translaldolase (EC:2.2.1.2)
TRANSALDOLASE_1 (db=PatternScan db_id=PS01054 from=24 to=32 evalue=0.0 interpro_id=IPR018225 interpro_description=Transaldolase, active site GO=Biological Process: carbohydrate metabolic process (GO:0005975))
ACD62_214_19

Not on your lists

comp(17958..18212)
DNA (255bp) protein (85aa)
Metallothio_Pro (db=HMMPfam db_id=PF02069 from=47 to=79 evalue=3.7e-08 interpro_id=IPR000518 interpro_description=Metallothionein, family 14, prokaryote GO=Molecular Function: metal ion binding (GO:0046872))
Uncharacterized protein {ECO:0000313|EMBL:EKD52461.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD62_214_20

Not on your lists

comp(18214..18657)
DNA (444bp) protein (148aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
seg (db=Seg db_id=seg from=47 to=60)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK (db=superfamily db_id=SSF55083 from=1 to=144 evalue=8.7e-37 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
HPPK (db=HMMPfam db_id=PF01288 from=2 to=115 evalue=1.2e-33 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
Displaying 20 items

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