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ACD68_32

Alias: ACD68_179709.11471.8

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD68_32_1

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1..423
DNA (423bp) protein (141aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=11 to=26)
seg (db=Seg db_id=seg from=54 to=69)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=108 to=130 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
ACD68_32_2

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389..1063
DNA (675bp) protein (225aa)
30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RS4_THERP (db=UNIREF evalue=1.0e-56 bit_score=222.0 identity=52.78 coverage=92.4444444444444)
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=113 to=137 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=19 to=224 evalue=1.2e-73 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD68_32_3

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1086..2054
DNA (969bp) protein (323aa)
DNA-directed RNA polymerase subunit alpha
seg (db=Seg db_id=seg from=282 to=297)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=25 to=322 evalue=4.1e-113 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=25 to=233 evalue=5.6e-71 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD68_32_4

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2107..2457
DNA (351bp) protein (117aa)
rplQ; Ribosomal protein L17
50S ribosomal protein L17 n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=RL17_SOLUE (db=UNIREF evalue=8.0e-22 bit_score=105.0 identity=47.41 coverage=98.2905982905983)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=116 evalue=1.3e-35 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.90.1030.10 from=1 to=116 evalue=2.0e-31 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD68_32_5

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2465..2884
DNA (420bp) protein (140aa)
50S ribosomal protein L13
50S ribosomal protein L13 n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BBA1_STRRD (db=UNIREF evalue=1.0e-27 bit_score=125.0 identity=46.21 coverage=93.5714285714286)
seg (db=Seg db_id=seg from=114 to=130)
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=16 to=135 evalue=1.2e-41 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD68_32_6

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2893..3300
DNA (408bp) protein (136aa)
30S ribosomal protein S9 n=3 Tax=Clostridium RepID=RS9_CLONN (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=55.2 coverage=91.1764705882353)
rpsI; 30S ribosomal protein S9
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=74 to=92 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=9 to=135 evalue=4.3e-43 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
ACD68_32_7

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comp(3367..4854)
DNA (1488bp) protein (496aa)
seg (db=Seg db_id=seg from=384 to=394)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
seg (db=Seg db_id=seg from=265 to=279)
PEGA (db=HMMPfam db_id=PF08308 from=74 to=137 evalue=6.1e-08 interpro_id=IPR013229 interpro_description=PEGA)
ACD68_32_8

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4886..6172
DNA (1287bp) protein (429aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=MURA_DESOH (db=UNIREF evalue=1.0e-80 bit_score=304.0 identity=41.01 coverage=96.5034965034965)
seg (db=Seg db_id=seg from=27 to=42)
ACD68_32_9

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6175..7182
DNA (1008bp) protein (336aa)
rod shape-determining protein MreB
rod shape-determining protein MreB
Rod shape-determining protein mreB n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L071_THERP (db=UNIREF evalue=4.0e-112 bit_score=408.0 identity=63.53 coverage=97.3214285714286)
seg (db=Seg db_id=seg from=134 to=144)
ACD68_32_10

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7189..8295
DNA (1107bp) protein (369aa)
putative glycosyltransferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=363 evalue=1.3e-52)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=2 to=367 evalue=1.8e-38)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=367 evalue=1.8e-38)
ACD68_32_11

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8873..9298
DNA (426bp) protein (142aa)
seg (db=Seg db_id=seg from=108 to=119)
Uncharacterized protein {ECO:0000313|EMBL:EKD46314.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD68_32_12

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9295..10344
DNA (1050bp) protein (350aa)
BNR repeat-containing glycosyl hydrolase (db=KEGG evalue=7.0e-17 bit_score=91.7 identity=27.41 coverage=86.5714285714286)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=5 to=16)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=31 to=236 evalue=2.7e-25)
ACD68_32_13

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10350..10913
DNA (564bp) protein (188aa)
ribosome-recycling factor
coiled-coil (db=Coil db_id=coil from=159 to=180 evalue=NA)
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=1 to=187 evalue=2.3e-59 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=1 to=187 evalue=2.3e-59 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
ACD68_32_14

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11111..11503
DNA (393bp) protein (131aa)
membrane-associated zinc metalloprotease
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
seg (db=Seg db_id=seg from=49 to=60)
Peptidase_M50 (db=HMMPfam db_id=PF02163 from=2 to=66 evalue=6.7e-12 interpro_id=IPR008915 interpro_description=Peptidase M50 GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
Displaying 14 items

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