ggKbase home page

ACD69_76

Alias: ACD69_2018.5160.49

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD69_76_1

Not on your lists

comp(3..290)
DNA (288bp) protein (96aa)
DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y4Z3_9GAMM (db=UNIREF evalue=3.0e-33 bit_score=143.0 identity=68.89 coverage=92.7083333333333)
dnaQ; DNA polymerase III subunit epsilon
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=6 to=96 evalue=2.8e-29 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=2 to=96 evalue=4.6e-28)
ACD69_76_2
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(325..771)
DNA (447bp) protein (149aa)
rnhA; Ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GNV4_THISH (db=UNIREF evalue=1.0e-53 bit_score=211.0 identity=65.25 coverage=93.9597315436242)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=5 to=145 evalue=9.7e-59 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=8 to=144 evalue=1.2e-56)
ACD69_76_3
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(771..1226)
DNA (456bp) protein (152aa)
generic methyl-transferase
Generic methyl-transferase n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5C1D3_NITHN (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=35.76 coverage=96.0526315789474)
seg (db=Seg db_id=seg from=89 to=98)
seg (db=Seg db_id=seg from=56 to=67)
ACD69_76_4
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1570..2976)
DNA (1407bp) protein (469aa)
Cysteinyl-tRNA synthetase n=5 Tax=Pseudomonas RepID=SYC_PSEE4 (db=UNIREF evalue=3.0e-155 bit_score=551.0 identity=56.25 coverage=97.8678038379531)
cysS; cysteinyl-tRNA synthetase
cysS; cysteinyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=361 to=389 evalue=NA)
ACD69_76_5
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3001..4134
DNA (1134bp) protein (378aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPB5_THISH (db=UNIREF evalue=3.0e-102 bit_score=375.0 identity=46.98 coverage=99.4708994708995)
yggW; coproporphyrinogen III oxidase
yggW; coproporphyrinogen III oxidase
hemN_rel: putative oxygen-independent coprop (db=HMMTigr db_id=TIGR00539 from=5 to=369 evalue=1.7e-113 interpro_id=IPR004559 interpro_description=Putative oxygen-independent coproporphyrinogen III oxidase GO=Molecular Function: coproporphyrinogen oxidase activity (GO:0004109), Cellular Component: cytoplasm (GO:0005737), Biological Process: porphyrin biosynthetic process (GO:0006779), Biological Process: oxidation reduction (GO:0055114))
ACD69_76_6
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4237..4887
DNA (651bp) protein (217aa)
Phage SPO1 DNA polymerase domain protein n=1 Tax=Rickettsiella grylli RepID=A8PQ90_9COXI (db=UNIREF evalue=4.0e-67 bit_score=257.0 identity=54.39 coverage=98.1566820276498)
phage SPO1 DNA polymerase-like protein
UDG_fam4: uracil-DNA glycosylase, family (db=HMMTigr db_id=TIGR00758 from=47 to=216 evalue=1.4e-93 interpro_id=IPR005273 interpro_description=Phage SPO1 DNA polymerase-related protein)
no description (db=Gene3D db_id=G3DSA:3.40.470.10 from=35 to=216 evalue=1.3e-64 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
ACD69_76_7
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5060..5212
DNA (153bp) protein (51aa)
5060..5212 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
hypothetical protein Tax=RBG_16_Gammaproteobacteria_37_9_curated
Displaying 7 items

View Taxonomy