Alias: ACD71_3342.26929.13
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD71_16_1
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(23..1837)
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resolvase
seg (db=Seg db_id=seg from=552 to=559)
seg (db=Seg db_id=seg from=370 to=383)
seg (db=Seg db_id=seg from=249 to=262)
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ACD71_16_2
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(1850..3409)
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1850..3409 - (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44520.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_3
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(3439..4476)
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3439..4476 - (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44521.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_4
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
4770..5084
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4770..5084 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44522.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_5
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(5183..5761)
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hypothetical protein
30S ribosomal protein S17 n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RP20_CLOPE (db=UNIREF evalue=4.0e-14 bit_score=80.9 identity=35.71 coverage=75.1295336787565)
seg (db=Seg db_id=seg from=133 to=142)
30S ribosomal protein S17 {ECO:0000313|EMBL:EKD44523.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_6
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(5800..7398)
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SLH (db=HMMPfam db_id=PF00395 from=38 to=74 evalue=1.9e-05 interpro_id=IPR001119 interpro_description=S-layer homology domain)
SLH (db=ProfileScan db_id=PS51272 from=32 to=95 evalue=7.896 interpro_id=IPR001119 interpro_description=S-layer homology domain)
SLH (db=ProfileScan db_id=PS51272 from=158 to=221 evalue=9.676 interpro_id=IPR001119 interpro_description=S-layer homology domain)
Uncharacterized protein {ECO:0000313|EMBL:EKD44524.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_7
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(7501..8490)
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N-6 DNA methylase
N-6 DNA methylase
N-6 DNA Methylase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0B0_9CLOT (db=UNIREF evalue=3.0e-94 bit_score=348.0 identity=53.15 coverage=99.3939393939394)
N6_MTASE (db=PatternScan db_id=PS00092 from=115 to=121 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
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ACD71_16_8
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(9111..10253)
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Restriction endonuclease S subunits (EC:3.1.21.3)
Restriction endonuclease S subunits n=1 Tax=Eubacterium rectale M104/1 RepID=D4JLS3_9FIRM (db=UNIREF evalue=4.0e-48 bit_score=196.0 identity=34.09 coverage=91.0761154855643)
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=2 to=185 evalue=2.3e-30)
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=249 to=379 evalue=6.7e-19)
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ACD71_16_9
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(10260..12410)
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seg (db=Seg db_id=seg from=5 to=20)
seg (db=Seg db_id=seg from=495 to=510)
RVT_1 (db=HMMPfam db_id=PF00078 from=171 to=323 evalue=5.3e-10 interpro_id=IPR000477 interpro_description=RNA-directed DNA polymerase (reverse transcriptase) GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
RT_POL (db=ProfileScan db_id=PS50878 from=1 to=349 evalue=12.75 interpro_id=IPR000477 interpro_description=RNA-directed DNA polymerase (reverse transcriptase) GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
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ACD71_16_10
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(12423..15128)
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helicase, type I site-specific restriction-modification system restriction subunit (EC:3.1.21.3)
helicase, type I site-specific restriction-modification system restriction subunit (EC:3.1.21.3)
Type III restriction protein res subunit n=1 Tax=Geobacter sp. FRC-32 RepID=B9M295_GEOSF (db=UNIREF evalue=1.0e-140 bit_score=504.0 identity=35.52 coverage=98.780487804878)
seg (db=Seg db_id=seg from=556 to=569)
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ACD71_16_11
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
15430..16497
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15430..16497 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD44506.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_12
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
16533..16964
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16533..16964 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44507.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_13
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
16980..17417
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seg (db=Seg db_id=seg from=2 to=9)
Uncharacterized protein {ECO:0000313|EMBL:EKD44508.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_14
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(17487..17708)
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putative transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=69 evalue=5.6e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=8 to=61 evalue=7.9e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=69 evalue=1.5e-05)
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ACD71_16_15
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(17755..18468)
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seg (db=Seg db_id=seg from=106 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=48)
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ACD71_16_16
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(18490..20094)
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seg (db=Seg db_id=seg from=468 to=479)
seg (db=Seg db_id=seg from=316 to=327)
seg (db=Seg db_id=seg from=283 to=300)
seg (db=Seg db_id=seg from=201 to=217)
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ACD71_16_17
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(20100..20903)
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coiled-coil (db=Coil db_id=coil from=33 to=57 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=13 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKD44512.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_18
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(20944..21540)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
Uncharacterized protein {ECO:0000313|EMBL:EKD44513.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_19
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(21569..22171)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=170)
Uncharacterized protein {ECO:0000313|EMBL:EKD44514.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_20
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
22656..23012
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22656..23012 + (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44515.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_21
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(23024..23773)
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23024..23773 - (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44516.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_22
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(23784..25244)
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seg (db=Seg db_id=seg from=247 to=265)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=354 to=437 evalue=1.7e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKD44517.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD71_16_23
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(25306..26184)
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25306..26184 - (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD44518.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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