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ACD72_25

Alias: ACD72_43765.7894.8

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD72_25_1

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comp(3..476)
DNA (474bp) protein (158aa)
Fic family protein
Fic-like (db=superfamily db_id=SSF140931 from=101 to=157 evalue=7.3e-10)
Fic family protein {ECO:0000313|EMBL:EKD43207.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sfu:Sfum_2057 filamentation induced by cAMP protein Fic alias=ACD78_C00213G00003,ACD78_180495.2799.6G0003,ACD78_180495.2799.6_3 id=124778 tax=ACD78 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD72_25_2

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1125..1310
DNA (186bp) protein (62aa)
seg (db=Seg db_id=seg from=6 to=16)
seg (db=Seg db_id=seg from=40 to=58)
Uncharacterized protein {ECO:0000313|EMBL:EKD43208.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD72_25_3

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comp(1353..1913)
DNA (561bp) protein (187aa)
Elongation factor P n=2 Tax=Streptomyces RepID=B5GBI3_9ACTO (db=UNIREF evalue=9.0e-43 bit_score=176.0 identity=46.24 coverage=98.3957219251337)
efp; translation elongation factor P
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=186 evalue=3.6e-87 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
Translation elongation factor P (db=HMMPIR db_id=PIRSF005901 from=1 to=186 evalue=2.6e-56 interpro_id=IPR020599 interpro_description=Translation elongation factor P/YeiP)
ACD72_25_4

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comp(2230..3264)
DNA (1035bp) protein (345aa)
hypothetical protein
genX: lysyl-tRNA synthetase-like protein Gen (db=HMMTigr db_id=TIGR00462 from=17 to=336 evalue=9.7e-111 interpro_id=IPR004525 interpro_description=Lysyl-tRNA synthetase-related GO=Molecular Function: lysine-tRNA ligase activity (GO:0004824), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: lysyl-tRNA aminoacylation (GO:0006430))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=10 to=335 evalue=9.2e-70)
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=11 to=341 evalue=1.0e-66)
ACD72_25_5
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3302..3538)
DNA (237bp) protein (79aa)
30S ribosomal protein S18
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=9 to=78 evalue=1.1e-22 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S18 (db=HMMPfam db_id=PF01084 from=21 to=73 evalue=4.8e-22 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=6 to=78 evalue=2.8e-20)
ACD72_25_6
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3549..3989)
DNA (441bp) protein (147aa)
hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=146 evalue=4.0e-50 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=1 to=146 evalue=4.4e-47 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=3 to=142 evalue=2.6e-41 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD72_25_7

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comp(4007..4534)
DNA (528bp) protein (176aa)
S6: ribosomal protein S6 (db=HMMTigr db_id=TIGR00166 from=19 to=112 evalue=2.1e-15 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=19 to=115 evalue=3.0e-15 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=20 to=107 evalue=9.2e-14 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
no description (db=Gene3D db_id=G3DSA:3.30.70.60 from=19 to=118 evalue=2.6e-12 interpro_id=IPR014717 interpro_description=Translation elongation factor EF1B/ribosomal protein S6)
ACD72_25_8

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4641..6362
DNA (1722bp) protein (574aa)
secretion system protein E
secretion system protein E
Type II secretion system protein E n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT43_9BACT (db=UNIREF evalue=2.0e-140 bit_score=503.0 identity=46.68 coverage=95.993031358885)
coiled-coil (db=Coil db_id=coil from=20 to=44 evalue=NA)
ACD72_25_9
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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6368..7477
DNA (1110bp) protein (370aa)
type II secretion system protein F
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
ACD72_25_10

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7480..7926
DNA (447bp) protein (149aa)
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EKD43206.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM alias=ACD18_1774.4492.23G0005,ACD18_1774.4492.23_5,ACD18_C00033G00005 id=13194 tax=ACD18 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1, not OD1-i organism_desc= OD1
Displaying 10 items

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