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ACD72_55

Alias: ACD72_507508.10364.5

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD72_55_1

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2..280
DNA (279bp) protein (93aa)
50S ribosomal protein L22
seg (db=Seg db_id=seg from=83 to=92)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=2 to=79 evalue=1.4e-26 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=81 evalue=3.0e-23 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD72_55_2

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289..1002
DNA (714bp) protein (238aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RS3_CARHZ (db=UNIREF evalue=2.0e-51 bit_score=205.0 identity=47.37 coverage=86.1344537815126)
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=214 evalue=4.4e-75 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
CHLOROPLAST 30S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760:SF10 from=91 to=214 evalue=3.4e-45)
ACD72_55_3

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1017..1433
DNA (417bp) protein (139aa)
rplP; 50S ribosomal protein L16
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=62 to=73 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=130 evalue=6.7e-66 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S/60S RIBOSOMAL PROTEIN L16 (db=HMMPanther db_id=PTHR12220 from=1 to=137 evalue=3.2e-50 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD72_55_4

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1792..2163
DNA (372bp) protein (124aa)
rplN; 50S ribosomal protein L14
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=123 evalue=1.3e-72 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S RIBOSOMAL PROTEIN L14 (db=HMMPanther db_id=PTHR11761:SF3 from=1 to=123 evalue=3.0e-61 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD72_55_5

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2175..2483
DNA (309bp) protein (103aa)
50S ribosomal protein L24
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=2 to=100 evalue=3.6e-28 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=102 evalue=1.2e-27 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=101 evalue=5.5e-27 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD72_55_6

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2495..3031
DNA (537bp) protein (179aa)
50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=56 to=72 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=3 to=178 evalue=7.3e-77 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=3 to=178 evalue=7.3e-77)
ACD72_55_7

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3033..3218
DNA (186bp) protein (62aa)
30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=23 to=45 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=13 to=61 evalue=3.2e-28 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=10 to=60 evalue=1.2e-24 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD72_55_8

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3249..3641
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=2 Tax=Dictyoglomus RepID=RS8_DICT6 (db=UNIREF evalue=4.0e-32 bit_score=139.0 identity=55.47 coverage=96.9465648854962)
rpsH; 30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=100 to=117 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=129 evalue=9.8e-47 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD72_55_9

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3812..4252
DNA (441bp) protein (147aa)
rplF; 50S ribosomal protein L6
seg (db=Seg db_id=seg from=136 to=146)
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=22 to=145 evalue=4.3e-52)
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=22 to=145 evalue=4.3e-52 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD72_55_10

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4275..4646
DNA (372bp) protein (124aa)
50S ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CJV7_ROBBH (db=UNIREF evalue=3.0e-09 bit_score=64.3 identity=51.22 coverage=63.7096774193548)
seg (db=Seg db_id=seg from=79 to=92)
seg (db=Seg db_id=seg from=11 to=23)
ACD72_55_11

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4666..5181
DNA (516bp) protein (172aa)
rpsE; 30S ribosomal protein S5
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=34 to=66 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
30S RIBOSOMAL PROTEIN S5 (db=HMMPanther db_id=PTHR13718:SF2 from=13 to=157 evalue=2.7e-56)
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=13 to=157 evalue=2.7e-56 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD72_55_12

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5184..5627
DNA (444bp) protein (148aa)
50S ribosomal protein L15
50S ribosomal protein L15 n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3P919_DEFDS (db=UNIREF evalue=6.0e-10 bit_score=66.2 identity=41.1 coverage=96.6216216216216)
seg (db=Seg db_id=seg from=44 to=60)
seg (db=Seg db_id=seg from=25 to=40)
ACD72_55_13

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5667..6941
DNA (1275bp) protein (425aa)
preprotein translocase subunit SecY
seg (db=Seg db_id=seg from=94 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=387 to=406)
transmembrane_regions (db=TMHMM db_id=tmhmm from=360 to=382)
ACD72_55_14
RIFOXYA2_FULL_OD1_Magasanikbacteria_44_8_curated, Magasanikbacteria, Parcubacteria, Bacteria

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7214..9046
DNA (1833bp) protein (611aa)
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG n=2 Tax=Dehalococcoides RepID=A5FQ63_DEHSB (db=UNIREF evalue=2.0e-138 bit_score=496.0 identity=47.26 coverage=93.2896890343699)
seg (db=Seg db_id=seg from=542 to=553)
ACD72_55_15

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9088..9300
DNA (213bp) protein (71aa)
9088..9300 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD43073.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD72_55_16

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comp(9350..9655)
DNA (306bp) protein (102aa)
9350..9655 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD43074.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD72_55_17

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comp(10161..10397)
DNA (237bp) protein (79aa)
DNA repair protein RadA
DNA repair protein radA n=6 Tax=Ralstonia RepID=B2UAX3_RALPJ (db=UNIREF evalue=1.0e-09 bit_score=65.5 identity=40.79 coverage=92.4050632911392)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=75 evalue=8.0e-12 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Uncharacterized protein {ECO:0000313|EMBL:EKD43072.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 17 items

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