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ACD72_171

Alias: ACD72_451987.12825.7

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD72_171_1
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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2..130
DNA (129bp) protein (43aa)
2..130 + (rbs_motif=None rbs_spacer=None)
group 1 glycosyl transferase Tax=RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated
ACD72_171_2
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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201..707
DNA (507bp) protein (169aa)
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=100 to=112)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF41 from=1 to=162 evalue=7.4e-38)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=1 to=162 evalue=7.4e-38)
ACD72_171_3

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677..967
DNA (291bp) protein (97aa)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=10 to=73 evalue=4.2e-17)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=15 to=73 evalue=4.9e-15 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=13 to=85 evalue=2.0e-13)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=20 to=73 evalue=4.2e-09)
ACD72_171_4

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951..1565
DNA (615bp) protein (205aa)
glycosyltransferase
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=2 to=203 evalue=4.7e-22)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=2 to=203 evalue=5.5e-22)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=2 to=103 evalue=9.4e-17 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD72_171_5
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(1558..3054)
DNA (1497bp) protein (499aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=428 to=447)
transmembrane_regions (db=TMHMM db_id=tmhmm from=457 to=488)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=3 to=13)
ACD72_171_6

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comp(3068..3778)
DNA (711bp) protein (237aa)
Methylase involved in ubiquinone/menaquinone biosynthesis
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=106 to=231 evalue=8.4e-17)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=88 to=153 evalue=1.5e-15 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=106 to=162 evalue=5.4e-12)
ACD72_171_7
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3786..4688)
DNA (903bp) protein (301aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
GART (db=PatternScan db_id=PS00373 from=129 to=152 evalue=0.0 interpro_id=IPR001555 interpro_description=Phosphoribosylglycinamide formyltransferase, active site GO=Molecular Function: methyltransferase activity (GO:0008168))
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=2 to=299 evalue=6.9e-86 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
Formyltransferase (db=superfamily db_id=SSF53328 from=2 to=203 evalue=5.9e-55 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD72_171_8
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(4691..5191)
DNA (501bp) protein (167aa)
Peptide deformylase
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=164 evalue=2.5e-48 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Pep_deformylase (db=HMMPfam db_id=PF01327 from=4 to=158 evalue=1.3e-44 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
POLYPEPTIDE DEFORMYLASE (db=HMMPanther db_id=PTHR10458 from=6 to=152 evalue=5.7e-44 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD72_171_9

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comp(5193..7043)
DNA (1851bp) protein (617aa)
primosomal protein N''
seg (db=Seg db_id=seg from=108 to=117)
priA: primosomal protein N' (db=HMMTigr db_id=TIGR00595 from=129 to=611 evalue=7.2e-65 interpro_id=IPR005259 interpro_description=Primosomal protein n GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA replication (GO:0006260))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=117 to=277 evalue=1.4e-08)
ACD72_171_10
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(7050..7841)
DNA (792bp) protein (264aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=20 to=41 evalue=NA)
LigB subunit of an aromatic-ring-opening dioxygenase LigAB (db=superfamily db_id=SSF53213 from=1 to=261 evalue=2.0e-36 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
LigB (db=HMMPfam db_id=PF02900 from=6 to=257 evalue=3.5e-34 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
ACD72_171_11

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comp(7859..10075)
DNA (2217bp) protein (739aa)
hypothetical protein
seg (db=Seg db_id=seg from=218 to=227)
seg (db=Seg db_id=seg from=5 to=20)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=468 to=726 evalue=6.9e-44)
ACD72_171_12
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(10292..10630)
DNA (339bp) protein (113aa)
Export-related chaperone CsaA n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5BXM6_NITHN (db=UNIREF evalue=8.0e-41 bit_score=169.0 identity=69.64 coverage=98.2300884955752)
export-related chaperone CsaA
chap_CsaA: export-related chaperone CsaA (db=HMMTigr db_id=TIGR02222 from=6 to=112 evalue=4.1e-59 interpro_id=IPR008231 interpro_description=Secretion chaperone CsaA)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=111 evalue=1.1e-30 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD72_171_13
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(10737..11234)
DNA (498bp) protein (166aa)
zinc-binding CMP/dCMP deaminase protein
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=52 to=89 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
CYTIDINE/DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11079:SF9 from=5 to=148 evalue=1.2e-31)
CYTOSINE DEAMINASE (db=HMMPanther db_id=PTHR11079 from=5 to=148 evalue=1.2e-31)
ACD72_171_14

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comp(11283..11984)
DNA (702bp) protein (234aa)
seg (db=Seg db_id=seg from=203 to=217)
Uncharacterized protein {ECO:0000313|EMBL:EKD43178.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD72_171_15

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comp(12614..12859)
DNA (246bp) protein (82aa)
ATP-dependent chaperone ClpB
ClpB_D2-small (db=HMMPfam db_id=PF10431 from=2 to=76 evalue=3.2e-25 interpro_id=IPR019489 interpro_description=Clp ATPase, C-terminal)
no description (db=Gene3D db_id=G3DSA:1.10.8.60 from=1 to=80 evalue=6.5e-19)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=80 evalue=7.3e-06)
Displaying 15 items

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