ggKbase home page

ACD72_212

Alias: ACD72_30849.2485.10

Search features with annotation key words

Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD72_212_1
unknown

Not on your lists

2..67
DNA (66bp) protein (22aa)
2..67 + (rbs_motif=None rbs_spacer=None)
ACD72_212_2
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

64..732
DNA (669bp) protein (223aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
ACD72_212_3

Not on your lists

680..1408
DNA (729bp) protein (243aa)
hypothetical protein
seg (db=Seg db_id=seg from=145 to=161)
seg (db=Seg db_id=seg from=66 to=77)
seg (db=Seg db_id=seg from=127 to=136)
ACD72_212_4
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1403..2053)
DNA (651bp) protein (217aa)
pseudouridine synthase
PSI_RLU (db=PatternScan db_id=PS01129 from=55 to=69 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=2 to=216 evalue=1.2e-47 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=2 to=188 evalue=1.7e-36)
ACD72_212_5
RIFOXYD2_FULL_OD1_Magasanikbacteria_36_9_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2055..2519)
DNA (465bp) protein (155aa)
ruvC; Holliday junction endodeoxyribonuclease RuvC
seg (db=Seg db_id=seg from=132 to=142)
RUVC (db=PatternScan db_id=PS01321 from=106 to=141 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site)
RuvC (db=HMMPfam db_id=PF02075 from=3 to=143 evalue=5.0e-45 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Displaying 5 items

View Taxonomy