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ACD74_58

Alias: ACD74_5749.3627.10

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD74_58_1

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comp(2..709)
DNA (708bp) protein (236aa)
seg (db=Seg db_id=seg from=213 to=221)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=165 to=236 evalue=8.5e-11 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=164 to=236 evalue=6.8e-09 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=169 to=234 evalue=6.1e-08 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD74_58_2

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comp(737..1465)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=43 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=28)
Uncharacterized protein {ECO:0000313|EMBL:EKD40759.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD74_58_3

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comp(1482..2099)
DNA (618bp) protein (206aa)
putative Staphylococcus nuclease-like protein (SNase-like)
Staphylococcal nuclease (db=superfamily db_id=SSF50199 from=62 to=199 evalue=2.3e-30 interpro_id=IPR016071 interpro_description=Staphylococcal nuclease (SNase-like), OB-fold GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
no description (db=Gene3D db_id=G3DSA:2.40.50.90 from=62 to=191 evalue=1.1e-25 interpro_id=IPR006021 interpro_description=Staphylococcal nuclease (SNase-like) GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
no description (db=HMMSmart db_id=SM00318 from=69 to=192 evalue=3.4e-21 interpro_id=IPR006021 interpro_description=Staphylococcal nuclease (SNase-like) GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD74_58_4

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comp(2203..2772)
DNA (570bp) protein (190aa)
seg (db=Seg db_id=seg from=11 to=21)
coiled-coil (db=Coil db_id=coil from=147 to=175 evalue=NA)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=6 to=76 evalue=4.7e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=11 to=78 evalue=4.2e-10)
ACD74_58_5

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2968..3528
DNA (561bp) protein (187aa)
transcriptional regulator (db=KEGG evalue=4.0e-08 bit_score=60.8 identity=43.59 coverage=40.1069518716578)
coiled-coil (db=Coil db_id=coil from=94 to=115 evalue=NA)
HTH_3 (db=HMMPfam db_id=PF01381 from=7 to=57 evalue=3.8e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=6 to=62 evalue=5.8e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD74_58_6

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3525..3665
DNA (141bp) protein (47aa)
3525..3665 + (rbs_motif=AGxAGG/AGGxGG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD40763.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 6 items

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