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ACD75_21

Alias: ACD75_9101.12325.28

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_21_1

Not on your lists

comp(1..195)
DNA (195bp) protein (65aa)
hypothetical protein
Gll3948 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NED2_GLOVI (db=UNIREF evalue=4.0e-20 bit_score=100.0 identity=69.23 coverage=98.4615384615385)
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=5 to=65 evalue=4.4e-07 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Uncharacterized protein {ECO:0000313|EMBL:EKD34115.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_2

Not on your lists

comp(238..1158)
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ANQ7_DESPS (db=UNIREF evalue=4.0e-70 bit_score=268.0 identity=46.26 coverage=95.114006514658)
hypothetical protein
YceI-like (db=superfamily db_id=SSF101874 from=129 to=306 evalue=1.5e-26 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
YceI (db=HMMPfam db_id=PF04264 from=130 to=303 evalue=1.6e-24 interpro_id=IPR007372 interpro_description=Lipid/polyisoprenoid-binding, YceI-like)
ACD75_21_3

Not on your lists

comp(1881..2192)
DNA (312bp) protein (104aa)
restriction endonuclease
seg (db=Seg db_id=seg from=2 to=30)
HNH (db=HMMPfam db_id=PF01844 from=39 to=84 evalue=5.0e-11 interpro_id=IPR002711 interpro_description=HNH endonuclease GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: endonuclease activity (GO:0004519))
no description (db=HMMSmart db_id=SM00507 from=30 to=81 evalue=4.1e-08 interpro_id=IPR003615 interpro_description=HNH nuclease)
ACD75_21_4

Not on your lists

comp(2193..2957)
DNA (765bp) protein (255aa)
folylpolyglutamate synthase/dihydrofolate synthase
seg (db=Seg db_id=seg from=218 to=230)
MurD-like peptide ligases, peptide-binding domain (db=superfamily db_id=SSF53244 from=103 to=249 evalue=7.3e-29 interpro_id=IPR004101 interpro_description=Mur ligase, C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058), Molecular Function: ligase activity (GO:0016874))
no description (db=Gene3D db_id=G3DSA:3.90.190.20 from=103 to=249 evalue=9.4e-27 interpro_id=IPR004101 interpro_description=Mur ligase, C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058), Molecular Function: ligase activity (GO:0016874))
ACD75_21_5

Not on your lists

3068..3496
DNA (429bp) protein (143aa)
3068..3496 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD34113.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_6

Not on your lists

comp(3654..4274)
DNA (621bp) protein (207aa)
DNA/RNA helicase, superfamily I
seg (db=Seg db_id=seg from=20 to=28)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=172 evalue=1.6e-34)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=28 to=123 evalue=1.3e-24)
ACD75_21_7

Not on your lists

4557..4763
DNA (207bp) protein (69aa)
4557..4763 + (rbs_motif=GGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD34110.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_8

Not on your lists

4788..5000
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=23 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKD34111.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_9

Not on your lists

5126..5485
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=41 to=61)
Uncharacterized protein {ECO:0000313|EMBL:EKD34112.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_10

Not on your lists

6093..6503
DNA (411bp) protein (137aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD34109.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PKD6_DESSD
ACD75_21_11

Not on your lists

6685..7032
DNA (348bp) protein (116aa)
6685..7032 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD34106.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_12

Not on your lists

7069..7479
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=114 to=124)
Uncharacterized protein {ECO:0000313|EMBL:EKD34107.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_13

Not on your lists

comp(8052..8303)
DNA (252bp) protein (84aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD34108.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_14

Not on your lists

8473..9144
DNA (672bp) protein (224aa)
beta-glucosidase-like glycosyl hydrolase
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=2 to=220 evalue=1.2e-57 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
no description (db=Gene3D db_id=G3DSA:3.20.20.300 from=2 to=218 evalue=1.8e-52 interpro_id=IPR001764 interpro_description=Glycoside hydrolase, family 3, N-terminal GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
Glyco_hydro_3 (db=HMMPfam db_id=PF00933 from=3 to=172 evalue=1.3e-31 interpro_id=IPR001764 interpro_description=Glycoside hydrolase, family 3, N-terminal GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
ACD75_21_15

Not on your lists

9177..9599
DNA (423bp) protein (141aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
seg (db=Seg db_id=seg from=82 to=91)
ACD75_21_16

Not on your lists

comp(9640..10341)
DNA (702bp) protein (234aa)
Ntr family two-component system sensory/regulatory protein
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=20 to=233 evalue=1.1e-37)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=20 to=233 evalue=1.1e-37)
CheY-like (db=superfamily db_id=SSF52172 from=112 to=233 evalue=1.0e-30 interpro_id=IPR011006 interpro_description=CheY-like)
ACD75_21_17

Not on your lists

10760..11032
DNA (273bp) protein (91aa)
10760..11032 + (rbs_motif=4Base/6BMM rbs_spacer=13-15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD34100.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_21_18

Not on your lists

11526..11810
DNA (285bp) protein (95aa)
hypothetical protein
Q6AJ67_DESPS_Q6AJ67; (db=BlastProDom db_id=PD061650 from=18 to=85 evalue=1.0e-16 interpro_id=IPR020281 interpro_description=Uncharacterised protein family UPF0250)
YbeD-like (db=superfamily db_id=SSF117991 from=10 to=94 evalue=7.5e-16)
DUF493 (db=HMMPfam db_id=PF04359 from=14 to=94 evalue=4.4e-15 interpro_id=IPR007454 interpro_description=Protein of unknown function DUF493)
ACD75_21_19

Not on your lists

11825..12337
DNA (513bp) protein (171aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD34102.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PKF5_DESSD
Displaying 19 items

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