ggKbase home page

ACD75_142

Alias: ACD75_1255.17864.64

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_142_1

Not on your lists

comp(3..374)
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=23 to=40)
DUF917 (db=HMMPfam db_id=PF06032 from=19 to=124 evalue=9.0e-15 interpro_id=IPR010318 interpro_description=Protein of unknown function DUF917)
Uncharacterized protein {ECO:0000313|EMBL:EKD39749.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD75_142_2

Not on your lists

551..2080
DNA (1530bp) protein (510aa)
phage integrase family protein
Phage integrase family protein n=2 Tax=Shewanella RepID=A4Y9I4_SHEPC (db=UNIREF evalue=3.0e-41 bit_score=173.0 identity=32.6 coverage=72.3529411764706)
coiled-coil (db=Coil db_id=coil from=487 to=508 evalue=NA)
seg (db=Seg db_id=seg from=343 to=349)
ACD75_142_3

Not on your lists

comp(2396..2614)
DNA (219bp) protein (73aa)
phage regulatory protein, AlpA family
Phage_AlpA (db=HMMPfam db_id=PF05930 from=25 to=64 evalue=1.1e-07 interpro_id=IPR010260 interpro_description=Prophage CP4-57 regulatory)
AlpA family phage regulatory protein {ECO:0000313|EMBL:EKD39751.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Phage regulatory protein, AlpA family n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AF07_GEOSK
ACD75_142_4

Not on your lists

3450..3725
DNA (276bp) protein (92aa)
3450..3725 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD39752.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_5

Not on your lists

3852..4067
DNA (216bp) protein (72aa)
HTH_3 (db=HMMPfam db_id=PF01381 from=5 to=50 evalue=5.4e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Uncharacterized protein {ECO:0000313|EMBL:EKD39753.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD75_142_6

Not on your lists

4064..4291
DNA (228bp) protein (76aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=6 to=54 evalue=6.8e-08 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Uncharacterized protein {ECO:0000313|EMBL:EKD39754.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
excisionase family DNA-binding domain-containing protein
ACD75_142_7

Not on your lists

4314..5255
DNA (942bp) protein (314aa)
TrfA family protein
seg (db=Seg db_id=seg from=212 to=221)
TrfA (db=HMMPfam db_id=PF07042 from=47 to=279 evalue=1.9e-14 interpro_id=IPR010751 interpro_description=TrfA)
TrfA family protein {ECO:0000313|EMBL:EKD39755.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_8

Not on your lists

5506..6042
DNA (537bp) protein (179aa)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=16 to=177 evalue=6.2e-08 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Uncharacterized protein {ECO:0000313|EMBL:EKD39756.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sigma-70 family RNA polymerase sigma factor
ACD75_142_9

Not on your lists

6045..6497
DNA (453bp) protein (151aa)
putative cytoplasmic protein
Uncharacterized protein {ECO:0000313|EMBL:EKD39757.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative cytoplasmic protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RI23_DESPD
ACD75_142_10

Not on your lists

6597..7142
DNA (546bp) protein (182aa)
OmpA/MotB domain-containing protein
OmpA/MotB domain protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E1G0_GEOLS (db=UNIREF evalue=2.0e-09 bit_score=65.5 identity=26.14 coverage=75.8241758241758)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=15 to=29)
ACD75_142_11

Not on your lists

7152..7478
DNA (327bp) protein (109aa)
hypothetical protein
seg (db=Seg db_id=seg from=62 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
ACD75_142_12

Not on your lists

7489..7767
DNA (279bp) protein (93aa)
type IV conjugative transfer system protein TraL
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
TraL (db=HMMPfam db_id=PF07178 from=9 to=72 evalue=1.0e-07 interpro_id=IPR009838 interpro_description=Type IV conjugative transfer system, protein TraL GO=Biological Process: conjugation (GO:0000746), Cellular Component: outer membrane (GO:0019867))
Type IV conjugative transfer system protein TraL n=1 Tax=uncultured bacterium RepID=K1YAF4_9BACT
ACD75_142_13

Not on your lists

7764..8354
DNA (591bp) protein (197aa)
sex pilus assembly/synthesis protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=23 to=32)
TraE (db=HMMPfam db_id=PF05309 from=1 to=180 evalue=2.6e-17)
ACD75_142_14

Not on your lists

8341..9084
DNA (744bp) protein (248aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AKM1_PELPD (db=UNIREF evalue=1.0e-42 bit_score=176.0 identity=38.89 coverage=86.2903225806452)
TraK (db=HMMPfam db_id=PF06586 from=2 to=239 evalue=1.3e-40 interpro_id=IPR010563 interpro_description=TraK)
Uncharacterized protein {ECO:0000313|EMBL:EKD39762.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_15

Not on your lists

9081..10238
DNA (1158bp) protein (386aa)
pilus assembly protein
Pilus assembly protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTZ2_SYNAS (db=UNIREF evalue=1.0e-72 bit_score=277.0 identity=60.73 coverage=56.4766839378238)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=36)
seg (db=Seg db_id=seg from=94 to=111)
ACD75_142_16

Not on your lists

comp(10385..11389)
DNA (1005bp) protein (335aa)
Protein serine/threonine phosphatase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9I7_9DELT (db=UNIREF evalue=6.0e-38 bit_score=161.0 identity=37.55 coverage=69.8507462686567)
putative protein serine/threonine phosphatase
no description (db=Gene3D db_id=G3DSA:3.60.40.10 from=92 to=331 evalue=1.8e-53 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
PP2C-like (db=superfamily db_id=SSF81606 from=94 to=331 evalue=2.1e-53 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
ACD75_142_17

Not on your lists

comp(11439..11843)
DNA (405bp) protein (135aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QH55_DESAH (db=UNIREF evalue=2.0e-09 bit_score=64.3 identity=28.23 coverage=91.1111111111111)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=1 to=105 evalue=5.3e-08 interpro_id=IPR011009 interpro_description=Protein kinase-like domain)
Uncharacterized protein {ECO:0000313|EMBL:EKD39765.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_18

Not on your lists

12063..12278
DNA (216bp) protein (72aa)
12063..12278 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD39748.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_19

Not on your lists

12617..12976
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=27 to=36)
Uncharacterized protein {ECO:0000313|EMBL:EKD39743.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_20

Not on your lists

comp(13452..13976)
DNA (525bp) protein (175aa)
GGDEF domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMP7_9CYAN (db=UNIREF evalue=3.0e-47 bit_score=190.0 identity=56.25 coverage=90.8571428571429)
diguanylate cyclase
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=5 to=168 evalue=7.7e-56 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
no description (db=HMMSmart db_id=SM00267 from=1 to=165 evalue=2.8e-53 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
ACD75_142_21

Not on your lists

comp(13973..14662)
DNA (690bp) protein (230aa)
Signal transduction family protein (GGDEF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9F5_DESAH (db=UNIREF evalue=1.0e-54 bit_score=216.0 identity=50.99 coverage=86.5217391304348)
signal transduction family protein (GGDEF domain-containing protein)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD75_142_22

Not on your lists

comp(14908..15978)
DNA (1071bp) protein (357aa)
multi-sensor signal transduction histidine kinase
seg (db=Seg db_id=seg from=65 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD75_142_23

Not on your lists

comp(16623..16952)
DNA (330bp) protein (110aa)
sterol desaturase
seg (db=Seg db_id=seg from=82 to=95)
Uncharacterized protein {ECO:0000313|EMBL:EKD39747.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Sterol desaturase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C5E3_DESTA
ACD75_142_24

Not on your lists

17140..17469
DNA (330bp) protein (110aa)
seg (db=Seg db_id=seg from=80 to=93)
Uncharacterized protein {ECO:0000313|EMBL:EKD39741.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_142_25

Not on your lists

comp(17536..17928)
DNA (393bp) protein (131aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
seg (db=Seg db_id=seg from=71 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
Displaying 25 items

View Taxonomy