ggKbase home page

ACD75_223

Alias: ACD75_678.2801.52

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_223_1

Not on your lists

comp(5..469)
DNA (465bp) protein (155aa)
Putative uncharacterized protein PY07686 (Fragment) n=1 Tax=Plasmodium yoelii yoelii RepID=Q7R7A2_PLAYO (db=UNIREF evalue=6.0e-09 bit_score=63.2 identity=34.03 coverage=91.6129032258064)
hypothetical protein (db=KEGG evalue=6.0e-09 bit_score=63.2 identity=34.03 coverage=91.6129032258064)
Uncharacterized protein {ECO:0000313|EMBL:EKD35205.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_223_2

Not on your lists

comp(788..1030)
DNA (243bp) protein (81aa)
788..1030 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD35204.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_223_3

Not on your lists


1550..1798
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=1 Tax=Desulfotalea psychrophila RepID=RS16_DESPS (db=UNIREF evalue=2.0e-31 bit_score=137.0 identity=78.75 coverage=95.1807228915663)
SSU ribosomal protein S16P
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=3 to=12 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=3 to=80 evalue=3.6e-33 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD75_223_4
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1801..2031
DNA (231bp) protein (77aa)
putative RNA-binding protein (contains KH domain)
seg (db=Seg db_id=seg from=50 to=64)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=61 evalue=5.0e-07 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=29 to=76 evalue=9.75 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))
ACD75_223_5

Not on your lists

2066..2617
DNA (552bp) protein (184aa)
16S rRNA processing protein RimM
16S_RimM: 16S rRNA processing protein RimM (db=HMMTigr db_id=TIGR02273 from=12 to=176 evalue=3.6e-41 interpro_id=IPR011961 interpro_description=16S rRNA processing protein RimM GO=Cellular Component: ribosome (GO:0005840), Biological Process: rRNA processing (GO:0006364), Molecular Function: ribosome binding (GO:0043022))
RimM (db=HMMPfam db_id=PF01782 from=15 to=96 evalue=4.5e-20 interpro_id=IPR002676 interpro_description=RimM protein GO=Biological Process: rRNA processing (GO:0006364))
Translation proteins (db=superfamily db_id=SSF50447 from=11 to=101 evalue=9.3e-20 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
ACD75_223_6

Not on your lists

2636..2863
DNA (228bp) protein (76aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
alpha/beta knot (db=superfamily db_id=SSF75217 from=1 to=76 evalue=2.2e-22)
no description (db=Gene3D db_id=G3DSA:3.40.1280.10 from=1 to=76 evalue=9.6e-19)
tRNA_m1G_MT (db=HMMPfam db_id=PF01746 from=24 to=72 evalue=2.6e-05 interpro_id=IPR016009 interpro_description=tRNA (guanine-N1-)-methyltransferase)
Displaying 6 items

View Taxonomy