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ACD75_286

Alias: ACD75_9395.19047.34

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_286_1
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..72)
DNA (72bp) protein (24aa)
1..72 - (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Dissimilatory adenylylsulfate reductase beta subunit {ECO:0000313|EMBL:ADW16945.1}; EC=1.8.99.2 {ECO:0000313|EMBL:ADW16945.1};; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Des
ACD75_286_2

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comp(331..2466)
DNA (2136bp) protein (712aa)
DNA segregation ATPase, FtsK/SpoIIIE family
DNA segregation ATPase, FtsK/SpoIIIE family
Related to cell division protein (FtsK) n=1 Tax=Desulfotalea psychrophila RepID=Q6AP92_DESPS (db=UNIREF evalue=0.0 bit_score=672.0 identity=59.75 coverage=98.876404494382)
seg (db=Seg db_id=seg from=519 to=530)
ACD75_286_3

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comp(2569..3000)
DNA (432bp) protein (144aa)
N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS (db=UNIREF evalue=2.0e-39 bit_score=164.0 identity=61.31 coverage=93.75)
transcription termination factor (NusB)
nusB: transcription antitermination factor N (db=HMMTigr db_id=TIGR01951 from=3 to=140 evalue=2.1e-54 interpro_id=IPR011605 interpro_description=NusB antitermination factor GO=Molecular Function: transcription termination factor activity (GO:0003715), Biological Process: transcription termination (GO:0006353))
NusB-like (db=superfamily db_id=SSF48013 from=3 to=136 evalue=3.1e-37 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD75_286_4

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comp(3024..3491)
DNA (468bp) protein (156aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Desulfotalea psychrophila RepID=RISB_DESPS (db=UNIREF evalue=8.0e-69 bit_score=261.0 identity=82.58 coverage=98.7179487179487)
riboflavin synthase, beta chain
lumazine-synth: 6,7-dimethyl-8-ribityl (db=HMMTigr db_id=TIGR00114 from=14 to=151 evalue=5.9e-72 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
Lumazine synthase (db=superfamily db_id=SSF52121 from=2 to=154 evalue=2.9e-57 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
ACD75_286_5

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comp(3543..4754)
DNA (1212bp) protein (404aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12 3.5.4.25)
Probable riboflavin biosynthesis protein (RibA) n=1 Tax=Desulfotalea psychrophila RepID=Q6AP95_DESPS (db=UNIREF evalue=3.0e-180 bit_score=634.0 identity=75.68 coverage=99.5049504950495)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (db=HMMPIR db_id=PIRSF001259 from=1 to=403 evalue=4.8e-194 interpro_id=IPR016299 interpro_description=Riboflavin biosynthesis protein RibA)
ACD75_286_6

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comp(4806..5465)
DNA (660bp) protein (220aa)
riboflavin synthase alpha chain (EC:2.5.1.9)
seg (db=Seg db_id=seg from=3 to=22)
Riboflavin synthase, alpha subunit (db=HMMPIR db_id=PIRSF000498 from=1 to=207 evalue=3.9e-89 interpro_id=IPR001783 interpro_description=Lumazine-binding protein)
RIBOFLAVIN SYNTHASE ALPHA CHAIN (db=HMMPanther db_id=PTHR21098 from=1 to=218 evalue=6.6e-75 interpro_id=IPR001783 interpro_description=Lumazine-binding protein)
ACD75_286_7

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comp(5486..6091)
DNA (606bp) protein (202aa)
hypothetical protein
TPR-like (db=superfamily db_id=SSF48452 from=31 to=198 evalue=1.3e-13)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=64 to=179 evalue=1.0e-06 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR_1 (db=HMMPfam db_id=PF00515 from=67 to=98 evalue=2.1e-05 interpro_id=IPR001440 interpro_description=Tetratricopeptide TPR-1)
ACD75_286_8

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comp(6088..7236)
DNA (1149bp) protein (383aa)
hypothetical protein
hypothetical protein
Heat repeat-containing PBS lyase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWI3_9DELT (db=UNIREF evalue=3.0e-105 bit_score=385.0 identity=51.87 coverage=93.2114882506527)
ARM repeat (db=superfamily db_id=SSF48371 from=181 to=333 evalue=3.1e-08 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
ACD75_286_9

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comp(7271..7900)
DNA (630bp) protein (210aa)
hypothetical protein
seg (db=Seg db_id=seg from=44 to=56)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=6 to=192 evalue=6.7e-44 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD75_286_10

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comp(8086..9057)
DNA (972bp) protein (324aa)
FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWJ7_9DELT (db=UNIREF evalue=1.0e-120 bit_score=436.0 identity=65.94 coverage=99.0740740740741)
Riboflavin biosynthesis protein RibF/RibC types (db=HMMPIR db_id=PIRSF004491 from=1 to=314 evalue=6.5e-144 interpro_id=IPR002606 interpro_description=Riboflavin kinase/FAD synthetase GO=Molecular Function: FMN adenylyltransferase activity (GO:0003919), Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
ACD75_286_11

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9926..11878
DNA (1953bp) protein (651aa)
Probable phosphoenolpyruvate carboxykinase n=1 Tax=Desulfotalea psychrophila RepID=Q6APA2_DESPS (db=UNIREF evalue=0.0 bit_score=1041.0 identity=77.29 coverage=98.6175115207373)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
seg (db=Seg db_id=seg from=627 to=639)
ACD75_286_12

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12048..12989
DNA (942bp) protein (314aa)
hypothetical protein
seg (db=Seg db_id=seg from=168 to=176)
seg (db=Seg db_id=seg from=183 to=199)
seg (db=Seg db_id=seg from=260 to=271)
ACD75_286_13

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13175..14308
DNA (1134bp) protein (378aa)
lambda CII stability-governing protein (HflK)
lambda CII stability-governing protein (HflK)
Probable lambda CII stability-governing protein (HflK) n=1 Tax=Desulfotalea psychrophila RepID=Q6APA3_DESPS (db=UNIREF evalue=7.0e-152 bit_score=540.0 identity=70.37 coverage=99.4708994708995)
coiled-coil (db=Coil db_id=coil from=262 to=283 evalue=NA)
ACD75_286_14

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14335..15273
DNA (939bp) protein (313aa)
lambda CII stability-governing protein (HflC)
lambda CII stability-governing protein (HflC)
Probable lambda CII stability-governing protein (HflC) n=1 Tax=Desulfotalea psychrophila RepID=Q6APA4_DESPS (db=UNIREF evalue=1.0e-131 bit_score=473.0 identity=73.72 coverage=99.3610223642172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD75_286_15

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comp(15405..16079)
DNA (675bp) protein (225aa)
hypothetical protein
seg (db=Seg db_id=seg from=184 to=194)
Uncharacterized protein {ECO:0000313|EMBL:EKD33979.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=Q6APA5_DESPS
ACD75_286_16

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comp(16136..16660)
DNA (525bp) protein (175aa)
DNA polymerase I n=1 Tax=Desulfotalea psychrophila RepID=Q6APA8_DESPS (db=UNIREF evalue=2.0e-64 bit_score=247.0 identity=69.54 coverage=98.8571428571429)
DNA polymerase I (EC:2.7.7.7)
DNA_POLYMERASE_A (db=PatternScan db_id=PS00447 from=2 to=21 evalue=0.0 interpro_id=IPR019760 interpro_description=DNA-directed DNA polymerase, family A, conserved site)
DNA POLYMERASE I (db=HMMPanther db_id=PTHR10133 from=1 to=171 evalue=7.2e-74)
ACD75_286_17

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17241..17738
DNA (498bp) protein (166aa)
seg (db=Seg db_id=seg from=8 to=23)
Uncharacterized protein {ECO:0000313|EMBL:EKD33975.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_286_18

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18280..18954
DNA (675bp) protein (225aa)
seg (db=Seg db_id=seg from=55 to=72)
Uncharacterized protein {ECO:0000313|EMBL:EKD33973.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_286_19
unknown

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19036..19101
DNA (66bp) protein (22aa)
19036..19101 + (rbs_motif=None rbs_spacer=None)
Displaying 19 items

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