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ACD75_365

Alias: ACD75_5051.25555.36

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_365_1

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58..1290
DNA (1233bp) protein (411aa)
hypothetical protein
hypothetical protein
Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPP5_SYNAS (db=UNIREF evalue=1.0e-158 bit_score=563.0 identity=71.05 coverage=99.5133819951338)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD75_365_2

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1375..2430
DNA (1056bp) protein (352aa)
radical SAM domain-containing protein
coiled-coil (db=Coil db_id=coil from=63 to=84 evalue=NA)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=124 to=301 evalue=2.8e-25)
no description (db=HMMSmart db_id=SM00729 from=32 to=295 evalue=2.5e-19 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)
ACD75_365_3

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2660..3874
DNA (1215bp) protein (405aa)
arabinose efflux permease family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
seg (db=Seg db_id=seg from=57 to=85)
seg (db=Seg db_id=seg from=337 to=349)
ACD75_365_4

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3847..4143
DNA (297bp) protein (99aa)
seg (db=Seg db_id=seg from=25 to=49)
Uncharacterized protein {ECO:0000313|EMBL:EKD36172.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_5

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comp(4384..5727)
DNA (1344bp) protein (448aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M936_GEOSF (db=UNIREF evalue=1.0e-135 bit_score=486.0 identity=53.05 coverage=98.6607142857143)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains rbh
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains rbh
SIGMA54_INTERACT_1 (db=PatternScan db_id=PS00675 from=167 to=180 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
ACD75_365_6

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comp(5738..7246)
DNA (1509bp) protein (503aa)
PAS domain S-box
PAS domain S-box
Sensor protein n=1 Tax=Geobacter sp. FRC-32 RepID=B9M937_GEOSF (db=UNIREF evalue=7.0e-109 bit_score=398.0 identity=43.03 coverage=98.6083499005964)
seg (db=Seg db_id=seg from=283 to=295)
ACD75_365_7

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7700..8287
DNA (588bp) protein (196aa)
Isochorismatase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LX27_SYNAS (db=UNIREF evalue=9.0e-42 bit_score=172.0 identity=50.28 coverage=91.8367346938776)
isochorismatase
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=187 evalue=1.4e-45 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=2 to=165 evalue=2.9e-42 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD75_365_8

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8387..9322
DNA (936bp) protein (312aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Geobacter sp. FRC-32 RepID=B9M935_GEOSF (db=UNIREF evalue=2.0e-144 bit_score=515.0 identity=76.95 coverage=98.3974358974359)
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase
3-HYDROXYACYL-COA DEHYROGENASE (db=HMMPanther db_id=PTHR23309 from=46 to=293 evalue=1.0e-53)
ACD75_365_9

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comp(9758..10081)
DNA (324bp) protein (108aa)
9758..10081 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD36177.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_10

Not on your lists

10140..11789
DNA (1650bp) protein (550aa)
peptide arylation enzyme rbh
peptide arylation enzyme rbh
AMP-dependent synthetase and ligase n=1 Tax=Geobacter sp. FRC-32 RepID=B9M938_GEOSF (db=UNIREF evalue=0.0 bit_score=697.0 identity=62.27 coverage=98.9090909090909)
seg (db=Seg db_id=seg from=64 to=75)
siderophore and nonribosomal peptides (VibE) Jill Banfield (11/16/12)
ACD75_365_11

Not on your lists

11865..13256
DNA (1392bp) protein (464aa)
major facilitator superfamily protein rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 n=1 Tax=Geobacter sp. FRC-32 RepID=B9M939_GEOSF (db=UNIREF evalue=2.0e-160 bit_score=569.0 identity=68.5 coverage=97.6293103448276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
ACD75_365_12

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13546..14265
DNA (720bp) protein (240aa)
zinc-binding alcohol dehydrogenase
seg (db=Seg db_id=seg from=129 to=142)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=2 to=222 evalue=6.6e-48 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-containing GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=2 to=222 evalue=6.6e-48)
ACD75_365_13

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comp(14439..14732)
DNA (294bp) protein (98aa)
14439..14732 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD36181.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_14

Not on your lists

14979..15488
DNA (510bp) protein (170aa)
Transposase, IS4 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRD7_9DELT (db=UNIREF evalue=2.0e-58 bit_score=227.0 identity=70.2 coverage=88.2352941176471)
Transposase, IS4 {ECO:0000313|EMBL:EKD36182.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_15

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comp(15672..16322)
DNA (651bp) protein (217aa)
2-isopropylmalate synthase
ISOPROPYLMALATE SYNTHASE RELATED (db=HMMPanther db_id=PTHR10277 from=12 to=193 evalue=2.1e-43)
ISOPROPYLMALATE SYNTHASE (db=HMMPanther db_id=PTHR10277:SF2 from=12 to=193 evalue=2.1e-43 interpro_id=IPR005668 interpro_description=Yeast 2-isopropylmalate synthase GO=Molecular Function: 2-isopropylmalate synthase activity (GO:0003852), Biological Process: leucine biosynthetic process (GO:0009098))
2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (db=superfamily db_id=SSF110921 from=97 to=214 evalue=3.7e-32 interpro_id=IPR013709 interpro_description=2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO=Molecular Function: 2-isopropylmalate synthase activity (GO:0003852), Biological Process: leucine biosynthetic process (GO:0009098))
ACD75_365_16

Not on your lists

comp(16423..16563)
DNA (141bp) protein (47aa)
2-isopropylmalate synthase
AIPM_HOMOCIT_SYNTH_1 (db=PatternScan db_id=PS00815 from=3 to=19 evalue=0.0 interpro_id=IPR002034 interpro_description=Alpha-isopropylmalate/homocitrate synthase, conserved site GO=Biological Process: carboxylic acid metabolic process (GO:0019752), Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912))
Aldolase (db=superfamily db_id=SSF51569 from=1 to=44 evalue=6.8e-12)
HMGL-like (db=HMMPfam db_id=PF00682 from=4 to=43 evalue=4.2e-11 interpro_id=IPR000891 interpro_description=Pyruvate carboxyltransferase GO=Molecular Function: catalytic activity (GO:0003824))
ACD75_365_17

Not on your lists

comp(16613..18439)
DNA (1827bp) protein (609aa)
putative PAS/PAC sensor protein
putative PAS/PAC sensor protein
Putative PAS/PAC sensor protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=D5CRI1_SIDLE (db=UNIREF evalue=1.0e-93 bit_score=347.0 identity=50.0 coverage=54.0229885057471)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
ACD75_365_18

Not on your lists

comp(18545..18667)
DNA (123bp) protein (41aa)
18545..18667 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD36186.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_19

Not on your lists

comp(18941..19072)
DNA (132bp) protein (44aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
Uncharacterized protein {ECO:0000313|EMBL:EKD36165.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_20

Not on your lists

comp(19127..19351)
DNA (225bp) protein (75aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DM28_DESVM (db=UNIREF evalue=8.0e-19 bit_score=95.9 identity=83.56 coverage=96.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
ACD75_365_21

Not on your lists

comp(19663..20484)
DNA (822bp) protein (274aa)
metal-dependent hydrolase
seg (db=Seg db_id=seg from=162 to=173)
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=2 to=272 evalue=1.6e-52)
Amidohydro_2 (db=HMMPfam db_id=PF04909 from=4 to=272 evalue=7.6e-45 interpro_id=IPR006992 interpro_description=Amidohydrolase 2 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD75_365_22

Not on your lists

comp(20573..21202)
DNA (630bp) protein (210aa)
hypothetical protein
Bll0888 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89W05_BRAJA (db=UNIREF evalue=8.0e-51 bit_score=203.0 identity=53.23 coverage=94.7619047619048)
seg (db=Seg db_id=seg from=29 to=43)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=1 to=83 evalue=2.5e-18)
ACD75_365_23

Not on your lists

21530..21808
DNA (279bp) protein (93aa)
seg (db=Seg db_id=seg from=8 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKD36160.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_24

Not on your lists

21829..22593
DNA (765bp) protein (255aa)
seg (db=Seg db_id=seg from=192 to=202)
Uncharacterized protein {ECO:0000313|EMBL:EKD36161.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_365_25

Not on your lists

comp(23078..23995)
DNA (918bp) protein (306aa)
electron transfer flavoprotein subunit alpha
electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein, alpha subunit n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TD6_GEOMG (db=UNIREF evalue=1.0e-112 bit_score=409.0 identity=64.9 coverage=98.0392156862745)
ETF_ALPHA (db=PatternScan db_id=PS00696 from=246 to=272 evalue=0.0 interpro_id=IPR018206 interpro_description=Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site)
ACD75_365_26

Not on your lists

comp(24006..24776)
DNA (771bp) protein (257aa)
electron transfer flavoprotein subunit beta
electron transfer flavoprotein subunit beta
Electron transfer flavoprotein beta-subunit n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G5Z2_GEOUR (db=UNIREF evalue=6.0e-96 bit_score=353.0 identity=71.98 coverage=98.8326848249027)
seg (db=Seg db_id=seg from=225 to=240)
ACD75_365_27

Not on your lists

comp(24872..25609)
DNA (738bp) protein (246aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Geobacter sp. FRC-32 RepID=B9M960_GEOSF (db=UNIREF evalue=6.0e-99 bit_score=363.0 identity=69.46 coverage=96.7479674796748)
CCG (db=HMMPfam db_id=PF02754 from=30 to=89 evalue=3.2e-17 interpro_id=IPR004017 interpro_description=Cysteine-rich domain)
CCG (db=HMMPfam db_id=PF02754 from=155 to=212 evalue=2.5e-11 interpro_id=IPR004017 interpro_description=Cysteine-rich domain)
Displaying 27 items

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