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ACD75_953

Alias: ACD75_10552.9700.28

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_953_1

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2..460
DNA (459bp) protein (153aa)
DNA polymerase III, subunit gamma/tau (EC:2.7.7.7)
DNA polymerase III subunit gamma/tau-like protein {ECO:0000313|EMBL:EKD40330.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DNA polymerase III, subunit gamma/tau n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PJX3_DESSD
ACD75_953_2

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741..872
DNA (132bp) protein (44aa)
seg (db=Seg db_id=seg from=28 to=39)
DUF149 (db=HMMPfam db_id=PF02575 from=1 to=35 evalue=5.0e-11 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
YbaB-like (db=superfamily db_id=SSF82607 from=1 to=37 evalue=4.8e-10 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
no description (db=Gene3D db_id=G3DSA:3.30.1310.10 from=1 to=42 evalue=6.8e-07 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
ACD75_953_3

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879..1481
DNA (603bp) protein (201aa)
DNA replication and repair protein RecR
seg (db=Seg db_id=seg from=39 to=51)
RECR (db=PatternScan db_id=PS01300 from=58 to=79 evalue=0.0 interpro_id=IPR015967 interpro_description=Zinc finger C4-type, RecR GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=2 to=197 evalue=2.6e-91 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
ACD75_953_4

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1862..3790
DNA (1929bp) protein (643aa)
threonyl-tRNA synthetase (EC:6.1.1.3)
threonyl-tRNA synthetase (EC:6.1.1.3)
Probable threonyl-tRNA synthetase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANB7_DESPS (db=UNIREF evalue=0.0 bit_score=977.0 identity=75.04 coverage=98.9113530326594)
seg (db=Seg db_id=seg from=401 to=412)
ACD75_953_5

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4097..4432
DNA (336bp) protein (112aa)
translation initiation factor IF-3
Probable translation initiation factor IF-3 n=1 Tax=Desulfotalea psychrophila RepID=Q6ANB8_DESPS (db=UNIREF evalue=3.0e-39 bit_score=163.0 identity=81.98 coverage=98.2142857142857)
seg (db=Seg db_id=seg from=9 to=22)
IF3_C (db=HMMPfam db_id=PF00707 from=24 to=110 evalue=9.3e-31 interpro_id=IPR019815 interpro_description=Translation initiation factor 3, C-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD75_953_6

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4564..4761
DNA (198bp) protein (66aa)
50S ribosomal protein L35
50S ribosomal protein L35 n=1 Tax=Desulfotalea psychrophila RepID=RL35_DESPS (db=UNIREF evalue=3.0e-22 bit_score=107.0 identity=81.54 coverage=96.969696969697)
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=5 to=31 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=5.0e-34 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD75_953_7

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5125..5271
DNA (147bp) protein (49aa)
50S ribosomal protein L20 n=1 Tax=Desulfotalea psychrophila RepID=RL20_DESPS (db=UNIREF evalue=1.0e-11 bit_score=72.0 identity=68.75 coverage=95.9183673469388)
rplT; 50S ribosomal protein L20
Ribosomal protein L20 (db=superfamily db_id=SSF74731 from=1 to=47 evalue=1.7e-11)
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=38 evalue=2.2e-10 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD75_953_8

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5372..6385
DNA (1014bp) protein (338aa)
phenylalanyl-tRNA synthetase, alpha chain
phenylalanyl-tRNA synthetase, alpha chain
Phenylalanyl-tRNA synthetase alpha chain n=1 Tax=Desulfotalea psychrophila RepID=SYFA_DESPS (db=UNIREF evalue=3.0e-148 bit_score=528.0 identity=77.81 coverage=99.4082840236686)
seg (db=Seg db_id=seg from=239 to=250)
ACD75_953_9

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6415..8859
DNA (2445bp) protein (815aa)
phenylalanyl-tRNA synthetase, beta chain
phenylalanyl-tRNA synthetase, beta chain
Phenylalanyl-tRNA synthetase beta chain n=1 Tax=Desulfotalea psychrophila RepID=SYFB_DESPS (db=UNIREF evalue=0.0 bit_score=1029.0 identity=63.85 coverage=99.7546012269939)
seg (db=Seg db_id=seg from=492 to=503)
ACD75_953_10

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8852..9148
DNA (297bp) protein (99aa)
bacterial nucleoid DNA-binding protein
no description (db=HMMSmart db_id=SM00411 from=8 to=97 evalue=3.2e-29 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=8 to=97 evalue=4.6e-29 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
IHF-like DNA-binding proteins (db=superfamily db_id=SSF47729 from=8 to=97 evalue=7.5e-27 interpro_id=IPR010992 interpro_description=IHF-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD75_953_11

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9197..9571
DNA (375bp) protein (125aa)
putative transcriptional regulator
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=10 to=119 evalue=3.9e-17 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
no description (db=Gene3D db_id=G3DSA:1.10.1660.10 from=9 to=123 evalue=1.7e-09)
Displaying 11 items

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