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ACD75_1248

Alias: ACD75_497530.2507.6

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_1248_1

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2..85
DNA (84bp) protein (28aa)
Ribosomal_L16 (db=HMMPfam db_id=PF00252 from=1 to=21 evalue=0.00021 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Uncharacterized protein {ECO:0000313|EMBL:EKD36225.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1248_2

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82..273
DNA (192bp) protein (64aa)
ribosomal protein L29
RIBOSOMAL_L29 (db=PatternScan db_id=PS00579 from=39 to=53 evalue=0.0 interpro_id=IPR018254 interpro_description=Ribosomal protein L29, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=3 to=58 evalue=1.7e-21 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=60 evalue=3.9e-16 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD75_1248_3

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1128..1463
DNA (336bp) protein (112aa)
50S ribosomal protein L24 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPK9_9DELT (db=UNIREF evalue=6.0e-41 bit_score=169.0 identity=71.17 coverage=98.2142857142857)
ribosomal protein L24
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=11 to=28 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=5 to=107 evalue=2.7e-40 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
not used in cat phylogenetic analysis kelly wrighton (11/16/12)
ACD75_1248_4

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1482..2021
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXH9_9DELT (db=UNIREF evalue=3.0e-89 bit_score=330.0 identity=86.03 coverage=98.8888888888889)
50S ribosomal protein L5 rbh
50S ribosomal protein L5 rbh
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=57 to=73 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD75_1248_5

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2331..2540
DNA (210bp) protein (70aa)
30S ribosomal protein S8
no description (db=Gene3D db_id=G3DSA:3.30.1370.30 from=2 to=70 evalue=5.8e-20)
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=2 to=70 evalue=4.1e-18 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=70 evalue=1.9e-17 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
not used in concatenation kelly wrighton (11/16/12)
Displaying 5 items

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