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ACD75_1357

Alias: ACD75_5497.4372.41

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Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_1357_1

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comp(11..715)
DNA (705bp) protein (235aa)
translation elongation factor 2 (EF-2/EF-G)
Elongation factor G 2 n=1 Tax=Desulfotalea psychrophila RepID=EFG2_DESPS (db=UNIREF evalue=5.0e-107 bit_score=390.0 identity=76.82 coverage=98.7234042553192)
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=51 to=66 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
TRANSLATION ELONGATION FACTOR G (db=HMMPanther db_id=PTHR23115:SF13 from=1 to=231 evalue=1.8e-95)
ACD75_1357_2

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comp(797..1270)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Desulfotalea psychrophila RepID=RS7_DESPS (db=UNIREF evalue=1.0e-74 bit_score=281.0 identity=82.17 coverage=98.7341772151899)
30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=20 to=46 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
rpsG_bact: ribosomal protein S7 (db=HMMTigr db_id=TIGR01029 from=3 to=157 evalue=5.7e-104 interpro_id=IPR005717 interpro_description=Ribosomal protein S7, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD75_1357_3
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1302..1571)
DNA (270bp) protein (90aa)
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 n=3 Tax=Deltaproteobacteria RepID=RS12_DESPS (db=UNIREF evalue=1.0e-41 bit_score=171.0 identity=94.38 coverage=97.7777777777778)
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=9 to=16 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S12 (db=HMMPanther db_id=PTHR11652:SF1 from=1 to=89 evalue=7.1e-60 interpro_id=IPR005679 interpro_description=Ribosomal protein S12, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD75_1357_4

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comp(1888..4425)
DNA (2538bp) protein (846aa)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Desulfotalea psychrophila RepID=RPOC_DESPS (db=UNIREF evalue=0.0 bit_score=1425.0 identity=82.16 coverage=99.290780141844)
DNA-directed RNA polymerase, beta' subunit
DNA-directed RNA polymerase, beta' subunit
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (db=HMMPanther db_id=PTHR19376:SF4 from=1 to=841 evalue=7.8e-271)
rpoB for phylogenetic analysis. no alignment to desulfotalea YP064853. note desulfotalea genome has two rpoB annotated, one YP064853 is actual. the other one YP064854 does not align to other and has LBA in tree. kelly wrighton (11/16/12)
Displaying 4 items

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