Alias: ACDUNK_1250.21612.96
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD75_1420_1
Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(367..681)
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30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 (db=KEGG evalue=7.0e-51 bit_score=202.0 identity=94.23 coverage=98.0952380952381)
30S ribosomal protein S10 n=1 Tax=Desulfotalea psychrophila RepID=RS10_DESPS (db=UNIREF evalue=8.0e-51 bit_score=202.0 identity=94.23 coverage=98.0952380952381)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=30 to=45 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=5 to=103 evalue=1.6e-69 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
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may be region from multiple strains coassembled, explaining depth.
Strong hits to Desulfotalea
Jill Banfield
(11/16/12)
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ACD75_1420_2
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(723..1355)
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50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 (db=KEGG evalue=2.0e-84 bit_score=315.0 identity=77.51 coverage=98.5781990521327)
50S ribosomal protein L3 n=1 Tax=Desulfotalea psychrophila RepID=RL3_DESPS (db=UNIREF evalue=2.0e-84 bit_score=315.0 identity=77.51 coverage=98.5781990521327)
seg (db=Seg db_id=seg from=129 to=143)
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ACD75_1420_3
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(1390..1665)
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rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 (db=KEGG evalue=8.0e-27 bit_score=122.0 identity=78.08 coverage=78.2608695652174)
50S ribosomal protein L4 n=2 Tax=Desulfotalea psychrophila RepID=RL4_DESPS (db=UNIREF evalue=9.0e-27 bit_score=122.0 identity=78.08 coverage=78.2608695652174)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=18 to=73 evalue=5.0e-26 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=18 to=73 evalue=5.0e-26 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
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ACD75_1420_4
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(2080..2328)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
seg (db=Seg db_id=seg from=48 to=74)
SecE (db=HMMPfam db_id=PF00584 from=26 to=81 evalue=3.2e-17 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=26 to=82 evalue=4.7e-13 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
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ACD75_1420_5
Corynebacterium efficiens, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
comp(3175..3600)
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50S ribosomal protein L11 n=1 Tax=Desulfotalea psychrophila RepID=RL11_DESPS (db=UNIREF evalue=2.0e-66 bit_score=254.0 identity=84.4 coverage=98.5915492957747)
hypothetical protein
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=1.6e-95 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=9 to=140 evalue=3.8e-81 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_6
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(3660..4364)
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50S ribosomal protein L1 n=1 Tax=Desulfotalea psychrophila RepID=RL1_DESPS (db=UNIREF evalue=1.0e-100 bit_score=368.0 identity=73.82 coverage=98.7234042553192)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 (db=KEGG evalue=1.0e-100 bit_score=368.0 identity=73.82 coverage=98.7234042553192)
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=120 to=139 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
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Use for acd75 concatenation
kelly wrighton
(11/16/12)
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ACD75_1420_7
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(4581..5138)
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50S ribosomal protein L10 n=1 Tax=Desulfotalea psychrophila RepID=RL10_DESPS (db=UNIREF evalue=6.0e-67 bit_score=256.0 identity=72.46 coverage=89.247311827957)
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 (db=KEGG evalue=6.0e-67 bit_score=256.0 identity=72.46 coverage=89.247311827957)
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=1 to=98 evalue=4.7e-25 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
Q30KS2_CANFA_Q30KS2; (db=BlastProDom db_id=PD968187 from=6 to=139 evalue=0.004)
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ACD75_1420_8
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(5122..5379)
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50S ribosomal protein L4 n=2 Tax=Desulfotalea psychrophila RepID=RL4_DESPS (db=UNIREF evalue=1.0e-23 bit_score=111.0 identity=62.65 coverage=95.3488372093023)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 (db=KEGG evalue=1.0e-23 bit_score=111.0 identity=62.65 coverage=95.3488372093023)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=83 evalue=4.6e-16 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.40.1370.10 from=1 to=83 evalue=1.2e-15)
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ACD75_1420_9
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(5376..5663)
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50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 (db=KEGG evalue=2.0e-32 bit_score=140.0 identity=70.53 coverage=97.9166666666667)
50S ribosomal protein L23 n=1 Tax=Desulfotalea psychrophila RepID=RL23_DESPS (db=UNIREF evalue=2.0e-32 bit_score=140.0 identity=70.53 coverage=97.9166666666667)
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=89 evalue=2.1e-26 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=95 evalue=1.6e-25 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_10
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(5727..6548)
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50S ribosomal protein L2 n=1 Tax=Desulfotalea psychrophila RepID=RL2_DESPS (db=UNIREF evalue=9.0e-128 bit_score=459.0 identity=84.25 coverage=99.2700729927007)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=233 to=242)
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ACD75_1420_11
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(6561..6836)
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30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 (db=KEGG evalue=3.0e-41 bit_score=169.0 identity=87.91 coverage=97.8260869565217)
30S ribosomal protein S19 n=1 Tax=Desulfotalea psychrophila RepID=RS19_DESPS (db=UNIREF evalue=4.0e-41 bit_score=169.0 identity=87.91 coverage=97.8260869565217)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=91 evalue=1.8e-62 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
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ACD75_1420_12
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(6888..7220)
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50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 (db=KEGG evalue=7.0e-49 bit_score=195.0 identity=88.18 coverage=98.1981981981982)
50S ribosomal protein L22 n=1 Tax=Desulfotalea psychrophila RepID=RL22_DESPS (db=UNIREF evalue=7.0e-49 bit_score=195.0 identity=88.18 coverage=98.1981981981982)
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=83 to=107 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=5 to=107 evalue=5.4e-51 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD75_1420_13
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(7297..7947)
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30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 (db=KEGG evalue=3.0e-109 bit_score=397.0 identity=88.84 coverage=98.6175115207373)
30S ribosomal protein S3 n=1 Tax=Desulfotalea psychrophila RepID=RS3_DESPS (db=UNIREF evalue=3.0e-109 bit_score=397.0 identity=88.84 coverage=98.6175115207373)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=162 to=196 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(7988..8404)
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rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 (db=KEGG evalue=2.0e-55 bit_score=217.0 identity=81.88 coverage=98.5611510791367)
50S ribosomal protein L16 n=1 Tax=Desulfotalea psychrophila RepID=RL16_DESPS (db=UNIREF evalue=2.0e-55 bit_score=217.0 identity=81.88 coverage=98.5611510791367)
seg (db=Seg db_id=seg from=15 to=26)
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_15
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(8401..8589)
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50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 (db=KEGG evalue=5.0e-17 bit_score=89.7 identity=71.67 coverage=93.6507936507936)
coiled-coil (db=Coil db_id=coil from=1 to=32 evalue=NA)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=5 to=59 evalue=5.4e-21 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=5 to=60 evalue=6.5e-17 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_16
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(8652..8912)
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30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 (db=KEGG evalue=4.0e-29 bit_score=130.0 identity=91.86 coverage=97.7011494252874)
30S ribosomal protein S17 n=1 Tax=Desulfotalea psychrophila RepID=RS17_DESPS (db=UNIREF evalue=4.0e-29 bit_score=130.0 identity=91.86 coverage=97.7011494252874)
seg (db=Seg db_id=seg from=19 to=33)
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=59 to=71 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_17
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(8976..9344)
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50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 (db=KEGG evalue=2.0e-56 bit_score=220.0 identity=88.52 coverage=98.3739837398374)
50S ribosomal protein L14 n=1 Tax=Desulfotalea psychrophila RepID=RL14_DESPS (db=UNIREF evalue=3.0e-56 bit_score=220.0 identity=88.52 coverage=98.3739837398374)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=5.6e-80 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=122 evalue=1.7e-64 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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Use for concatenation
kelly wrighton
(11/16/12)
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ACD75_1420_18
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(9397..9732)
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50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 (db=KEGG evalue=3.0e-43 bit_score=176.0 identity=87.39 coverage=98.2142857142857)
50S ribosomal protein L24 n=1 Tax=Desulfotalea psychrophila RepID=RL24_DESPS (db=UNIREF evalue=4.0e-43 bit_score=176.0 identity=87.39 coverage=98.2142857142857)
seg (db=Seg db_id=seg from=84 to=98)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=11 to=28 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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strain 1 concatenation
kelly wrighton
(11/16/12)
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ACD75_1420_19
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria
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Not on your lists |
comp(9760..10299)
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rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 (db=KEGG evalue=1.0e-82 bit_score=308.0 identity=81.56 coverage=98.8888888888889)
50S ribosomal protein L5 n=1 Tax=Desulfotalea psychrophila RepID=RL5_DESPS (db=UNIREF evalue=2.0e-82 bit_score=308.0 identity=81.56 coverage=98.8888888888889)
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=57 to=73 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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used in concatenation strain 1
kelly wrighton
(11/16/12)
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ACD75_1420_20
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
comp(10588..10986)
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hydrolase, TatD family; K02994 small subunit ribosomal protein S8 (db=KEGG evalue=2.0e-43 bit_score=177.0 identity=62.88 coverage=98.4962406015038)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=102 to=119 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=2 to=132 evalue=1.3e-49 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=132 evalue=3.2e-47 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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concatenation strain 1
kelly wrighton
(11/16/12)
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ACD75_1420_21
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(11011..11550)
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50S ribosomal protein L6 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPL3_9DELT (db=UNIREF evalue=3.0e-48 bit_score=194.0 identity=54.75 coverage=98.3333333333333)
ribosomal protein L6; K02933 large subunit ribosomal protein L6 (db=KEGG evalue=4.0e-47 bit_score=190.0 identity=53.07 coverage=98.3333333333333)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=176 evalue=7.8e-87 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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concatenation 1
kelly wrighton
(11/16/12)
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ACD75_1420_22
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(11595..11960)
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50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 (db=KEGG evalue=3.0e-35 bit_score=150.0 identity=80.99 coverage=98.3606557377049)
50S ribosomal protein L18 n=1 Tax=Desulfotalea psychrophila RepID=RL18_DESPS (db=UNIREF evalue=4.0e-35 bit_score=150.0 identity=80.99 coverage=98.3606557377049)
seg (db=Seg db_id=seg from=7 to=22)
seg (db=Seg db_id=seg from=66 to=77)
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ACD75_1420_23
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(11985..12497)
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30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 (db=KEGG evalue=1.0e-65 bit_score=251.0 identity=83.04 coverage=98.8304093567251)
30S ribosomal protein S5 n=1 Tax=Desulfotalea psychrophila RepID=RS5_DESPS (db=UNIREF evalue=1.0e-65 bit_score=251.0 identity=83.04 coverage=98.8304093567251)
seg (db=Seg db_id=seg from=41 to=56)
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=32 to=64 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
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ACD75_1420_24
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(12562..12744)
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50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 (db=KEGG evalue=3.0e-18 bit_score=94.0 identity=76.27 coverage=95.0819672131148)
50S ribosomal protein L30 n=1 Tax=Desulfotalea psychrophila RepID=RL30_DESPS (db=UNIREF evalue=3.0e-18 bit_score=94.0 identity=76.27 coverage=95.0819672131148)
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=59 evalue=5.1e-27 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=5 to=59 evalue=1.1e-21 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD75_1420_25
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(12746..13198)
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50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 (db=KEGG evalue=3.0e-48 bit_score=193.0 identity=73.81 coverage=82.1192052980132)
50S ribosomal protein L15 n=1 Tax=Desulfotalea psychrophila RepID=RL15_DESPS (db=UNIREF evalue=4.0e-48 bit_score=193.0 identity=73.81 coverage=82.1192052980132)
seg (db=Seg db_id=seg from=126 to=141)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=109 to=139 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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Use for concatenation
kelly wrighton
(11/16/12)
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ACD75_1420_26
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(13260..14564)
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secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY (db=KEGG evalue=0.0 bit_score=761.0 identity=88.02 coverage=99.5402298850575)
Preprotein translocase subunit secY n=1 Tax=Desulfotalea psychrophila RepID=Q6AP50_DESPS (db=UNIREF evalue=0.0 bit_score=761.0 identity=88.02 coverage=99.5402298850575)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=329)
transmembrane_regions (db=TMHMM db_id=tmhmm from=362 to=384)
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ACD75_1420_27
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(14561..15355)
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Methionine aminopeptidase n=1 Tax=Desulfotalea psychrophila RepID=Q6AP49_DESPS (db=UNIREF evalue=1.0e-103 bit_score=379.0 identity=70.12 coverage=94.3396226415094)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] (db=KEGG evalue=1.0e-103 bit_score=379.0 identity=70.12 coverage=94.3396226415094)
MAP_1 (db=PatternScan db_id=PS00680 from=179 to=197 evalue=0.0 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
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ACD75_1420_28 |
Not on your lists |
comp(15444..15680)
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translation initiation factor IF-1; K02518 translation initiation factor IF-1 (db=KEGG evalue=2.0e-36 bit_score=154.0 identity=93.59 coverage=97.4683544303797)
Translation initiation factor IF-1 n=3 Tax=Deltaproteobacteria RepID=IF1_DESPS (db=UNIREF evalue=4.0e-36 bit_score=153.0 identity=93.59 coverage=97.4683544303797)
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=3 to=71 evalue=2.1e-45 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=71 evalue=3.3e-30 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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ACD75_1420_29
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(15857..16222)
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rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 (db=KEGG evalue=4.0e-50 bit_score=199.0 identity=91.51 coverage=86.0655737704918)
30S ribosomal protein S13 n=1 Tax=Desulfotalea psychrophila RepID=RS13_DESPS (db=UNIREF evalue=4.0e-50 bit_score=199.0 identity=91.51 coverage=86.0655737704918)
seg (db=Seg db_id=seg from=107 to=121)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=88 to=101 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD75_1420_30 |
Not on your lists |
comp(16247..16627)
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30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 (db=KEGG evalue=2.0e-49 bit_score=197.0 identity=93.91 coverage=89.7637795275591)
30S ribosomal protein S11 n=1 Tax=Desulfotalea psychrophila RepID=RS11_DESPS (db=UNIREF evalue=3.0e-49 bit_score=197.0 identity=93.91 coverage=89.7637795275591)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=94 to=116 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=7 to=123 evalue=4.8e-87 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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