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ACD75_1434

Alias: ACD75p_1951.12055.56

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD75_1434_1

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comp(3..251)
DNA (249bp) protein (83aa)
3..251 - ( gc_cont=0.482)
Uncharacterized protein {ECO:0000313|EMBL:EKD33671.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_2

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608..862
DNA (255bp) protein (85aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
seg (db=Seg db_id=seg from=50 to=76)
(db=HMMPfam db_id=PF00584 from=28 to=83 evalue=9.8e-17 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=28 to=84 evalue=1.6e-12 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACD75_1434_3

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942..1475
DNA (534bp) protein (178aa)
transcription antitermination protein NusG
transcription antitermination protein NusG
Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS (db=UNIREF evalue=2.0e-85 bit_score=318.0 identity=84.18 coverage=98.876404494382)
NUSG (db=PatternScan db_id=PS01014 from=160 to=169 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
ACD75_1434_4

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1564..1989
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Desulfotalea psychrophila RepID=RL11_DESPS (db=UNIREF evalue=2.0e-66 bit_score=254.0 identity=84.4 coverage=98.5915492957747)
50S ribosomal protein L11
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=7.7e-94 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=9 to=140 evalue=1.1e-80 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD75_1434_5

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2049..2753
DNA (705bp) protein (235aa)
50S ribosomal protein L1 n=1 Tax=Desulfotalea psychrophila RepID=RL1_DESPS (db=UNIREF evalue=2.0e-100 bit_score=369.0 identity=73.82 coverage=98.7234042553192)
ribosomal protein L1
ribosomal protein L1
ACD75_1434_6

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3275..3562
DNA (288bp) protein (96aa)
50S ribosomal protein L10 n=1 Tax=Desulfotalea psychrophila RepID=RL10_DESPS (db=UNIREF evalue=6.0e-34 bit_score=146.0 identity=77.53 coverage=91.6666666666667)
50S ribosomal protein L10
Uncharacterized protein {ECO:0000313|EMBL:EKD33665.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_7

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3619..3993
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 n=1 Tax=Desulfotalea psychrophila RepID=RL7_DESPS (db=UNIREF evalue=6.0e-26 bit_score=119.0 identity=82.26 coverage=97.6)
seg (db=Seg db_id=seg from=32 to=52)
seg (db=Seg db_id=seg from=99 to=116)
ACD75_1434_8

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comp(5004..5231)
DNA (228bp) protein (76aa)
5004..5231 - ( gc_cont=0.430)
Uncharacterized protein {ECO:0000313|EMBL:EKD33667.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_9

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comp(5457..5852)
DNA (396bp) protein (132aa)
hypothetical protein (db=KEGG evalue=8.0e-10 bit_score=65.9 identity=26.61 coverage=93.1818181818182)
Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MHF0_SALAR (db=UNIREF evalue=1.0e-09 bit_score=65.9 identity=26.61 coverage=93.1818181818182)
Uncharacterized protein {ECO:0000313|EMBL:EKD33668.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_10

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comp(5946..6224)
DNA (279bp) protein (93aa)
5946..6224 - ( gc_cont=0.545)
Uncharacterized protein {ECO:0000313|EMBL:EKD33669.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_11

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comp(7272..7652)
DNA (381bp) protein (127aa)
7272..7652 - ( gc_cont=0.504)
Uncharacterized protein {ECO:0000313|EMBL:EKD33670.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD75_1434_12
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7865..8512
DNA (648bp) protein (216aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Desulfotalea psychrophila RepID=RPOB_DESPS (db=UNIREF evalue=6.0e-101 bit_score=370.0 identity=82.33 coverage=99.0740740740741)
DNA-directed RNA polymerase, beta-subunit
DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 (db=HMMPanther db_id=PTHR20856 from=52 to=215 evalue=9.5e-97 interpro_id=IPR015712 interpro_description=DNA-directed RNA polymerase, subunit 2 GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: ribonucleoside binding (GO:0032549))
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (db=HMMPanther db_id=PTHR20856:SF3 from=52 to=215 evalue=9.5e-97)
ACD75_1434_13

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comp(8499..9278)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:EKD33664.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Rhizobium sp. PRF 81 RepID=N6UY44_9RHIZ
hypothetical protein
ACD75_1434_14

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comp(9682..10668)
DNA (987bp) protein (329aa)
seg (db=Seg db_id=seg from=310 to=324)
Uncharacterized protein {ECO:0000313|EMBL:EKD33661.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD75_1434_15

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comp(10726..10998)
DNA (273bp) protein (91aa)
10726..10998 - ( gc_cont=0.527)
Uncharacterized protein {ECO:0000313|EMBL:EKD33662.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD75_1434_16
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11449..12117
DNA (669bp) protein (223aa)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Desulfotalea psychrophila RepID=RPOC_DESPS (db=UNIREF evalue=1.0e-98 bit_score=362.0 identity=76.23 coverage=99.5515695067265)
DNA-directed RNA polymerase, beta' subunit
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=1 to=223 evalue=2.9e-31)
(db=HMMPfam db_id=PF04998 from=2 to=109 evalue=1.0e-24 interpro_id=IPR007081 interpro_description=RNA polymerase Rpb1, domain 5 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
Displaying 16 items

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