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ACD77_11

Alias: ACD77_69366.145479.11

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Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD77_11_1

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comp(3..242)
DNA (240bp) protein (80aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSQ3_9BACT (db=UNIREF evalue=2.0e-16 bit_score=87.8 identity=52.17 coverage=85.0)
HTH_3 (db=HMMPfam db_id=PF01381 from=7 to=60 evalue=1.7e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=4 to=60 evalue=6.3e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD77_11_2

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766..1989
DNA (1224bp) protein (408aa)
hypothetical protein
hypothetical protein
Putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Prevotella ruminicola 23 RepID=D5EZ31_PRER2 (db=UNIREF evalue=9.0e-117 bit_score=424.0 identity=49.63 coverage=97.0588235294118)
QueA-like (db=superfamily db_id=SSF111337 from=8 to=401 evalue=2.4e-92 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
ACD77_11_3

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comp(1963..3708)
DNA (1746bp) protein (582aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=129 to=150 evalue=NA)
seg (db=Seg db_id=seg from=85 to=94)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR12145 from=8 to=577 evalue=4.8e-44)
ACD77_11_4

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3747..5621
DNA (1875bp) protein (625aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AEJ4_9PORP (db=UNIREF evalue=0.0 bit_score=774.0 identity=59.71 coverage=97.76)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=12 to=604 evalue=2.9e-101)
ACD77_11_5

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5705..6841
DNA (1137bp) protein (379aa)
hypothetical protein
Acyltransferase family protein n=1 Tax=Prevotella oris F0302 RepID=D1QT57_9BACT (db=UNIREF evalue=3.0e-84 bit_score=315.0 identity=45.97 coverage=97.3614775725594)
seg (db=Seg db_id=seg from=164 to=177)
Acyltransferase (db=HMMPfam db_id=PF01553 from=82 to=155 evalue=4.7e-06 interpro_id=IPR002123 interpro_description=Phospholipid/glycerol acyltransferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: acyltransferase activity (GO:0008415))
ACD77_11_6

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7001..7648
DNA (648bp) protein (216aa)
hypothetical protein
seg (db=Seg db_id=seg from=110 to=129)
COA_TRANSF_1 (db=PatternScan db_id=PS01273 from=16 to=31 evalue=0.0 interpro_id=IPR004163 interpro_description=Coenzyme A transferase binding site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: CoA-transferase activity (GO:0008410))
KETOACID-COENZYME A TRANSFERASE (db=HMMPanther db_id=PTHR13707 from=24 to=212 evalue=1.4e-82 interpro_id=IPR004165 interpro_description=Coenzyme A transferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: CoA-transferase activity (GO:0008410))
ACD77_11_7

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7659..8045
DNA (387bp) protein (129aa)
3-aminobutyryl-CoA ammonia lyase
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=5 to=123 evalue=6.0e-12)
Uncharacterized protein {ECO:0000313|EMBL:EKD31367.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UPI0002887AB3 related cluster n=1 Tax=unknown RepID=UPI0002887AB3
ACD77_11_8

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8057..8884
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=3 Tax=Bacteroidales RepID=B2RJY8_PORG3 (db=UNIREF evalue=7.0e-139 bit_score=496.0 identity=88.06 coverage=96.7391304347826)
3-keto-5-aminohexanoate cleavage enzyme
3-keto-5-aminohexanoate cleavage enzyme
DUF849 (db=HMMPfam db_id=PF05853 from=3 to=271 evalue=5.5e-99 interpro_id=IPR008567 interpro_description=Protein of unknown function DUF849, prokaryotic)
ACD77_11_9

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8929..9969
DNA (1041bp) protein (347aa)
L-erythro-3,5-diaminohexanoate dehydrogenase
L-erythro-3,5-diaminohexanoate dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein n=4 Tax=Porphyromonas RepID=C2M975_9PORP (db=UNIREF evalue=4.0e-163 bit_score=577.0 identity=89.28 coverage=99.135446685879)
seg (db=Seg db_id=seg from=263 to=274)
ACD77_11_10

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9977..11011
DNA (1035bp) protein (345aa)
L-erythro-3,5-diaminohexanoate dehydrogenase
L-erythro-3,5-diaminohexanoate dehydrogenase
Zinc-binding alcohol dehydrogenase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH07_KOSOT (db=UNIREF evalue=3.0e-132 bit_score=475.0 identity=67.06 coverage=99.1304347826087)
seg (db=Seg db_id=seg from=232 to=242)
detected in pnnl proteomics kelly wrighton (1/6/13)
ACD77_11_11

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11016..12263
DNA (1248bp) protein (416aa)
lysine 2,3-aminomutase
lysine 2,3-aminomutase
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVA8_9BACT (db=UNIREF evalue=0.0 bit_score=664.0 identity=77.8 coverage=98.3173076923077)
lys_2_3_AblA: lysine-2,3-aminomutase (db=HMMTigr db_id=TIGR03820 from=12 to=412 evalue=2.9e-250 interpro_id=IPR022459 interpro_description=Lysine-2,3-aminomutase)
ACD77_11_12

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12269..13291
DNA (1023bp) protein (341aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVA7_9BACT (db=UNIREF evalue=1.0e-79 bit_score=300.0 identity=45.67 coverage=97.0674486803519)
Uncharacterized protein {ECO:0000313|EMBL:EKD31372.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) RepID=F9Z8C0_ODOSD
ACD77_11_13

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13281..14627
DNA (1347bp) protein (449aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVA6_9BACT (db=UNIREF evalue=4.0e-70 bit_score=269.0 identity=36.89 coverage=99.109131403118)
seg (db=Seg db_id=seg from=56 to=77)
seg (db=Seg db_id=seg from=20 to=27)
ACD77_11_14

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14651..16204
DNA (1554bp) protein (518aa)
dioxygenase
dioxygenase
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVA5_9BACT (db=UNIREF evalue=0.0 bit_score=762.0 identity=78.68 coverage=99.4208494208494)
seg (db=Seg db_id=seg from=196 to=209)
ACD77_11_15

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16206..17009
DNA (804bp) protein (268aa)
dioxygenase
dioxygenase
D-lysine 5,6-aminomutase beta subunit n=2 Tax=Porphyromonas gingivalis RepID=B2RJZ4_PORG3 (db=UNIREF evalue=2.0e-125 bit_score=451.0 identity=80.69 coverage=96.2686567164179)
METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR21091 from=40 to=261 evalue=6.4e-89)
ACD77_11_16

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17020..17679
DNA (660bp) protein (220aa)
hypothetical protein
seg (db=Seg db_id=seg from=79 to=92)
pcaJ_scoB_fam: 3-oxoacid CoA-transferas (db=HMMTigr db_id=TIGR02428 from=5 to=210 evalue=2.0e-120 interpro_id=IPR012791 interpro_description=3-oxoacid CoA-transferase, subunit B GO=Molecular Function: CoA-transferase activity (GO:0008410))
KETOACID-COENZYME A TRANSFERASE (db=HMMPanther db_id=PTHR13707 from=5 to=217 evalue=1.3e-102 interpro_id=IPR004165 interpro_description=Coenzyme A transferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: CoA-transferase activity (GO:0008410))
ACD77_11_17

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17681..18886
DNA (1206bp) protein (402aa)
hypothetical protein
hypothetical protein
FipA n=14 Tax=Fusobacterium RepID=Q47902_FUSNU (db=UNIREF evalue=1.0e-159 bit_score=566.0 identity=67.08 coverage=99.5024875621891)
THIOLASE_2 (db=PatternScan db_id=PS00737 from=347 to=363 evalue=0.0 interpro_id=IPR020613 interpro_description=Thiolase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
many pathways Jill Banfield (11/16/12)
ACD77_11_18

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18897..20390
DNA (1494bp) protein (498aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Bacteroides RepID=D2ESD5_9BACE (db=UNIREF evalue=5.0e-136 bit_score=488.0 identity=49.5 coverage=97.9919678714859)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
ACD77_11_19

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comp(20370..21311)
DNA (942bp) protein (314aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=64)
seg (db=Seg db_id=seg from=109 to=119)
ACD77_11_20

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comp(21308..23038)
DNA (1731bp) protein (577aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTT8_9BACT (db=UNIREF evalue=1.0e-155 bit_score=554.0 identity=58.33 coverage=96.3604852686309)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
ACD77_11_21

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comp(23080..24366)
DNA (1287bp) protein (429aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXM7_9BACT (db=UNIREF evalue=7.0e-149 bit_score=530.0 identity=59.67 coverage=98.6013986013986)
cysteate_syn: cysteate synthase (db=HMMTigr db_id=TIGR03844 from=4 to=407 evalue=6.7e-141 interpro_id=IPR022401 interpro_description=Cysteate synthase)
ACD77_11_22

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comp(24402..26195)
DNA (1794bp) protein (598aa)
hypothetical protein
Fe-S oxidoreductase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IPI1_9BACT (db=UNIREF evalue=1.0e-105 bit_score=388.0 identity=38.89 coverage=98.3277591973244)
seg (db=Seg db_id=seg from=37 to=48)
seg (db=Seg db_id=seg from=132 to=143)
Could this be nitrate reductase subunit? Jill Banfield (11/16/12)
ACD77_11_23

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comp(26208..26531)
DNA (324bp) protein (108aa)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=79 to=90 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
alpha-helical ferredoxin (db=superfamily db_id=SSF46548 from=20 to=106 evalue=7.4e-15 interpro_id=IPR009051 interpro_description=Alpha-helical ferredoxin GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: iron-sulfur cluster binding (GO:0051536), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.1060.10 from=4 to=106 evalue=5.7e-07 interpro_id=IPR012285 interpro_description=Fumarate reductase, C-terminal GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_2 (db=ProfileScan db_id=PS51379 from=68 to=99 evalue=7.038 interpro_id=IPR017896 interpro_description=4Fe-4S ferredoxin, iron-sulpur binding domain)
Fe4S4 Jill Banfield (11/16/12)
ACD77_11_24

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comp(26528..27547)
DNA (1020bp) protein (340aa)
hypothetical protein
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=337 evalue=2.3e-28)
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=3 to=335 evalue=2.2e-13)
Pyr_redox_2 (db=HMMPfam db_id=PF07992 from=4 to=133 evalue=1.1e-06 interpro_id=IPR013027 interpro_description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase)
ACD77_11_25

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comp(27544..28560)
DNA (1017bp) protein (339aa)
hypothetical protein
CCG (db=HMMPfam db_id=PF02754 from=209 to=268 evalue=8.7e-07 interpro_id=IPR004017 interpro_description=Cysteine-rich domain)
Uncharacterized protein {ECO:0000313|EMBL:EKD31385.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Heterodisulfide reductase, subunit B n=5 Tax=root RepID=I3YN28_ALIFI
ACD77_11_26

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comp(28564..29259)
DNA (696bp) protein (232aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MUX6_9BACT (db=UNIREF evalue=1.0e-66 bit_score=256.0 identity=52.17 coverage=97.8448275862069)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=68 to=79 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=21 to=32 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD77_11_27

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comp(29268..29708)
DNA (441bp) protein (147aa)
hypothetical protein
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=65 to=99 evalue=0.0 interpro_id=IPR000835 interpro_description=HTH transcriptional regulator, MarR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=143 evalue=1.5e-28)
no description (db=HMMSmart db_id=SM00347 from=26 to=126 evalue=1.8e-19 interpro_id=IPR000835 interpro_description=HTH transcriptional regulator, MarR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD77_11_28

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29805..31082
DNA (1278bp) protein (426aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=3 Tax=Bacteroidales RepID=A6L970_PARD8 (db=UNIREF evalue=2.0e-123 bit_score=446.0 identity=57.98 coverage=85.4460093896714)
seg (db=Seg db_id=seg from=80 to=92)
ACD77_11_29

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comp(31077..31511)
DNA (435bp) protein (145aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.4.16)
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=1 to=142 evalue=2.8e-39)
Methylglyoxal synthase-like (db=superfamily db_id=SSF52335 from=1 to=144 evalue=7.7e-30)
no description (db=HMMSmart db_id=SM00851 from=24 to=114 evalue=2.7e-22 interpro_id=IPR011607 interpro_description=MGS-like)
ACD77_11_30

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comp(34350..35438)
DNA (1089bp) protein (363aa)
hypothetical protein
hypothetical protein
Carbamoyl-phosphate synthase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRD8_AZOPC (db=UNIREF evalue=6.0e-141 bit_score=503.0 identity=66.86 coverage=96.1432506887052)
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=13 to=361 evalue=1.4e-198)
Displaying items 1-30 of 124 in total

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