ggKbase home page

ACD77_51

Alias: ACD77_58398.27255.11

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD77_51_1

Not on your lists

comp(3..896)
DNA (894bp) protein (298aa)
hypothetical protein
hypothetical protein
Phosphomannomutase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IJN7_9BACT (db=UNIREF evalue=6.0e-108 bit_score=394.0 identity=65.22 coverage=99.6644295302013)
PGM_PMM (db=PatternScan db_id=PS00710 from=101 to=110 evalue=0.0 interpro_id=IPR016066 interpro_description=Alpha-D-phosphohexomutase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287))
Jill Banfield (11/16/12)
ACD77_51_2

Not on your lists

932..1036
DNA (105bp) protein (35aa)
seg (db=Seg db_id=seg from=23 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKD31546.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD77_51_3

Not on your lists

comp(988..1446)
DNA (459bp) protein (153aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
ACD77_51_4

Not on your lists

comp(1492..3288)
DNA (1797bp) protein (599aa)
hypothetical protein
hypothetical protein
hypothetical protein BACCOPRO_01115 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B734 (db=UNIREF evalue=7.0e-89 bit_score=332.0 identity=33.12 coverage=99.4991652754591)
transmembrane_regions (db=TMHMM db_id=tmhmm from=543 to=565)
ACD77_51_5

Not on your lists

comp(3285..3518)
DNA (234bp) protein (78aa)
hypothetical protein
ATP-synt_D (db=HMMPfam db_id=PF01813 from=3 to=67 evalue=1.8e-12 interpro_id=IPR002699 interpro_description=ATPase, V1/A1 complex, subunit D GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting two-sector ATPase complex, catalytic domain (GO:0033178), Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626), Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961))
H(+)-transporting ATP synthase, vacuolar type, subunit D {ECO:0000313|EMBL:EKD31549.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
H(+)-transporting ATP synthase vacuolar type subunit D n=1 Tax=uncultured bacterium LAB20 RepID=M4Q7Q6_9BACT
ACD77_51_6
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

Not on your lists

comp(3523..4002)
DNA (480bp) protein (160aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=33 to=54 evalue=NA)
ATP-synt_D (db=HMMPfam db_id=PF01813 from=11 to=139 evalue=1.9e-10 interpro_id=IPR002699 interpro_description=ATPase, V1/A1 complex, subunit D GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting two-sector ATPase complex, catalytic domain (GO:0033178), Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626), Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961))
Tax=BJP_IG2069_Bacteroidetes_43_11
ACD77_51_7

Not on your lists

comp(4012..5172)
DNA (1161bp) protein (387aa)
ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit B (EC:3.6.3.14)
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N039_9BACT (db=UNIREF evalue=0.0 bit_score=659.0 identity=82.77 coverage=98.7080103359173)
V-TYPE ATP SYNTHASE BETA CHAIN (db=HMMPanther db_id=PTHR15184:SF11 from=1 to=291 evalue=7.9e-106)
ACD77_51_8

Not on your lists

comp(5367..7118)
DNA (1752bp) protein (584aa)
ATP synthase subunit A
ATP synthase subunit A
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N038_9BACT (db=UNIREF evalue=0.0 bit_score=903.0 identity=71.68 coverage=98.972602739726)
ATPASE_ALPHA_BETA (db=PatternScan db_id=PS00152 from=427 to=436 evalue=0.0 interpro_id=IPR020003 interpro_description=ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO=Molecular Function: ATP binding (GO:0005524))
ACD77_51_9

Not on your lists

comp(7139..7780)
DNA (642bp) protein (214aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=158 to=180)
seg (db=Seg db_id=seg from=165 to=181)
DUF2764 (db=HMMPfam db_id=PF10962 from=54 to=202 evalue=2.3e-38)
ACD77_51_10

Not on your lists

comp(7780..8397)
DNA (618bp) protein (206aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=43 to=75 evalue=NA)
seg (db=Seg db_id=seg from=120 to=139)
Uncharacterized protein {ECO:0000313|EMBL:EKD31523.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD77_51_11

Not on your lists

comp(8493..9650)
DNA (1158bp) protein (386aa)
glutaconyl-CoA decarboxylase subunit beta
glutaconyl-CoA decarboxylase subunit beta
Oxaloacetate decarboxylase beta chain n=5 Tax=Bacteroidales RepID=A6L8D6_PARD8 (db=UNIREF evalue=2.0e-140 bit_score=502.0 identity=81.3 coverage=99.2227979274611)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
decarboxylation reactions coupled to the vectorial transport of Na+ across the cytoplasmic membrane, creating a sodium ion motive force that is used for ATP synthesis [IPR]. May instead by part of ATP synthase? Jill Banfield (11/16/12)
ACD77_51_12

Not on your lists

comp(9652..10092)
DNA (441bp) protein (147aa)
hypothetical protein
Biotin carboxyl carrier protein n=6 Tax=Bacteroides RepID=C3PZR5_9BACE (db=UNIREF evalue=6.0e-28 bit_score=126.0 identity=56.55 coverage=95.9183673469388)
seg (db=Seg db_id=seg from=90 to=104)
BIOTIN (db=PatternScan db_id=PS00188 from=102 to=119 evalue=0.0 interpro_id=IPR001882 interpro_description=Biotin-binding site GO=Molecular Function: biotin binding (GO:0009374))
ACD77_51_13

Not on your lists

comp(10107..11012)
DNA (906bp) protein (302aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=14)
transmembrane_regions (db=TMHMM db_id=tmhmm from=195 to=217)
OAD_gamma (db=HMMPfam db_id=PF04277 from=195 to=264 evalue=1.6e-07 interpro_id=IPR005899 interpro_description=Sodium ion-translocating decarboxylase GO=Biological Process: sodium ion transport (GO:0006814), Molecular Function: oxaloacetate decarboxylase activity (GO:0008948), Molecular Function: sodium ion transmembrane transporter activity (GO:0015081), Cellular Component: membrane (GO:0016020))
ACD77_51_14

Not on your lists

comp(11031..12584)
DNA (1554bp) protein (518aa)
methylmalonyl-CoA carboxyltransferase
methylmalonyl-CoA carboxyltransferase
Methylmalonyl-CoA decarboxylase, alpha subunit n=5 Tax=Bacteroidales RepID=A6L8D9_PARD8 (db=UNIREF evalue=0.0 bit_score=932.0 identity=84.33 coverage=99.6138996138996)
PROPIONYL-COA CARBOXYLASE (db=HMMPanther db_id=PTHR22855:SF14 from=34 to=517 evalue=1.2e-284)
Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [IPR] Jill Banfield (11/16/12)
ACD77_51_15

Not on your lists

comp(12610..13029)
DNA (420bp) protein (140aa)
hypothetical protein
GLYOXALASE_I_1 (db=PatternScan db_id=PS00934 from=8 to=29 evalue=0.0 interpro_id=IPR018146 interpro_description=Glyoxalase I, conserved site GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462), Molecular Function: metal ion binding (GO:0046872))
metmalonyl_epim: methylmalonyl-CoA ep (db=HMMTigr db_id=TIGR03081 from=5 to=133 evalue=1.1e-57 interpro_id=IPR017515 interpro_description=Methylmalonyl-CoA epimerase)
GLYOXALASE FAMILY PROTEIN (db=HMMPanther db_id=PTHR21366 from=1 to=139 evalue=2.2e-49)
ACD77_51_16

Not on your lists

comp(13160..13876)
DNA (717bp) protein (239aa)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=148 to=154)
YebC-like (db=superfamily db_id=SSF75625 from=3 to=237 evalue=3.6e-81 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD77_51_17

Not on your lists

comp(13890..14573)
DNA (684bp) protein (228aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
seg (db=Seg db_id=seg from=33 to=43)
TPR-like (db=superfamily db_id=SSF48452 from=99 to=219 evalue=6.2e-11)
ACD77_51_18

Not on your lists

14673..15761
DNA (1089bp) protein (363aa)
hypothetical protein
DNA replication and repair protein recF n=1 Tax=Alistipes shahii WAL 8301 RepID=D4INI1_9BACT (db=UNIREF evalue=6.0e-88 bit_score=328.0 identity=46.54 coverage=98.8980716253444)
seg (db=Seg db_id=seg from=298 to=311)
RECF_1 (db=PatternScan db_id=PS00617 from=118 to=138 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD77_51_19

Not on your lists

15758..16048
DNA (291bp) protein (97aa)
RNA-binding protein
DUF721 (db=HMMPfam db_id=PF05258 from=9 to=94 evalue=6.9e-13 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721)
Uncharacterized protein {ECO:0000313|EMBL:EKD31532.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RH60_CELLC
ACD77_51_20

Not on your lists

16067..17230
DNA (1164bp) protein (388aa)
hypothetical protein
seg (db=Seg db_id=seg from=4 to=13)
D_2_HYDROXYACID_DH_1 (db=PatternScan db_id=PS00065 from=123 to=150 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
D_2_HYDROXYACID_DH_2 (db=PatternScan db_id=PS00670 from=196 to=218 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD77_51_21

Not on your lists

17232..18680
DNA (1449bp) protein (483aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AK57_9PORP (db=UNIREF evalue=1.0e-133 bit_score=480.0 identity=49.02 coverage=99.5859213250518)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=59 to=480 evalue=2.3e-14)
ACD77_51_22

Not on your lists

comp(18689..19093)
DNA (405bp) protein (135aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=121)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD31535.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD77_51_23

Not on your lists

comp(19086..19646)
DNA (561bp) protein (187aa)
hypothetical protein
RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=A7AIP1_9PORP (db=UNIREF evalue=3.0e-36 bit_score=154.0 identity=44.71 coverage=89.3048128342246)
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=46 to=77 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=176 evalue=4.1e-35 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD77_51_24

Not on your lists

19764..20171
DNA (408bp) protein (136aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=115 to=128)
ACD77_51_25

Not on your lists

comp(20250..21323)
DNA (1074bp) protein (358aa)
hypothetical protein
hypothetical protein
Deoxyhypusine synthase n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RB84_PHEZH (db=UNIREF evalue=2.0e-140 bit_score=502.0 identity=68.82 coverage=94.413407821229)
no description (db=Gene3D db_id=G3DSA:3.40.910.10 from=12 to=339 evalue=4.8e-87 interpro_id=IPR002773 interpro_description=Deoxyhypusine synthase GO=Biological Process: peptidyl-lysine modification to hypusine (GO:0008612))
ACD77_51_26

Not on your lists

21419..22567
DNA (1149bp) protein (383aa)
hypothetical protein rbh
hypothetical protein rbh
Diaminopimelate decarboxylase n=3 Tax=Bacteroides RepID=B3JMK2_9BACE (db=UNIREF evalue=1.0e-112 bit_score=409.0 identity=57.34 coverage=95.5613577023499)
seg (db=Seg db_id=seg from=216 to=230)
ACD77_51_27

Not on your lists

22597..23205
DNA (609bp) protein (203aa)
hypothetical protein
TetR family transcriptional regulator protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAT6_9PORP (db=UNIREF evalue=3.0e-22 bit_score=108.0 identity=27.36 coverage=96.551724137931)
Homeodomain-like (db=superfamily db_id=SSF46689 from=1 to=81 evalue=1.3e-11 interpro_id=IPR009057 interpro_description=Homeodomain-like)
TetR_N (db=HMMPfam db_id=PF00440 from=15 to=54 evalue=1.5e-10 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD77_51_28

Not on your lists

23236..24567
DNA (1332bp) protein (444aa)
hypothetical protein
hypothetical protein
Signal recognition particle subunit FFH/SRP54 (Srp54) n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IPX3_9BACT (db=UNIREF evalue=0.0 bit_score=649.0 identity=71.24 coverage=99.5495495495496)
coiled-coil (db=Coil db_id=coil from=303 to=324 evalue=NA)
ACD77_51_29

Not on your lists

24611..25477
DNA (867bp) protein (289aa)
hypothetical protein
hypothetical protein
Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=FOLD_AZOPC (db=UNIREF evalue=2.0e-104 bit_score=382.0 identity=66.43 coverage=98.2698961937716)
seg (db=Seg db_id=seg from=203 to=212)
ACD77_51_30

Not on your lists

comp(25608..27293)
DNA (1686bp) protein (562aa)
hypothetical protein
TonB-dependent receptor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QMB8_SPILD (db=UNIREF evalue=5.0e-48 bit_score=196.0 identity=29.78 coverage=97.864768683274)
seg (db=Seg db_id=seg from=434 to=447)
seg (db=Seg db_id=seg from=417 to=428)
Displaying 30 items

View Taxonomy