ggKbase home page

ACD77_129

Alias: ACD77_48199.40840.11

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD77_129_1

Not on your lists

168..2309
DNA (2142bp) protein (714aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=162 to=184)
transmembrane_regions (db=TMHMM db_id=tmhmm from=133 to=155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=118)
ACD77_129_2

Not on your lists

comp(2378..2878)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KIJ4_9GAMM (db=UNIREF evalue=7.0e-12 bit_score=72.8 identity=37.14 coverage=61.0778443113772)
conserved hypothetical protein, phosphopantetheine adenylyltransferase-like protein
seg (db=Seg db_id=seg from=119 to=146)
DUF2202 (db=HMMPfam db_id=PF09968 from=4 to=99 evalue=1.5e-15 interpro_id=IPR019243 interpro_description=Protein of unknown function DUF2202)
ACD77_129_3

Not on your lists

comp(3372..5813)
DNA (2442bp) protein (814aa)
hypothetical protein
seg (db=Seg db_id=seg from=364 to=375)
seg (db=Seg db_id=seg from=84 to=94)
seg (db=Seg db_id=seg from=612 to=623)
ACD77_129_4

Not on your lists

comp(5815..6615)
DNA (801bp) protein (267aa)
anti-sigma factor
seg (db=Seg db_id=seg from=43 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=62)
FecR (db=HMMPfam db_id=PF04773 from=70 to=155 evalue=5.1e-17 interpro_id=IPR006860 interpro_description=FecR protein)
ACD77_129_5

Not on your lists

comp(6647..7150)
DNA (504bp) protein (168aa)
RNA polymerase sigma-70 factor
seg (db=Seg db_id=seg from=156 to=166)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=10 to=165 evalue=2.1e-26 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=97 to=165 evalue=3.0e-11 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD77_129_6

Not on your lists

comp(7249..8847)
DNA (1599bp) protein (533aa)
Putative uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGY8_9BACT (db=UNIREF evalue=2.0e-85 bit_score=320.0 identity=35.01 coverage=92.4953095684803)
hypothetical protein
seg (db=Seg db_id=seg from=10 to=21)
Uncharacterized protein {ECO:0000313|EMBL:EKD31691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD77_129_7

Not on your lists

comp(8858..12133)
DNA (3276bp) protein (1092aa)
TonB-dependent receptor plug
TonB-dependent receptor plug
Outer membrane protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XQW5_9FLAO (db=UNIREF evalue=0.0 bit_score=751.0 identity=41.27 coverage=95.8791208791209)
seg (db=Seg db_id=seg from=54 to=68)
ACD77_129_8

Not on your lists

12433..13128
DNA (696bp) protein (232aa)
hypothetical protein
SIMPL (db=HMMPfam db_id=PF04402 from=30 to=230 evalue=2.2e-19 interpro_id=IPR007497 interpro_description=Protein of unknown function DUF541)
Uncharacterized protein {ECO:0000313|EMBL:EKD31693.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H9H0_9BACT
ACD77_129_9

Not on your lists

13431..14672
DNA (1242bp) protein (414aa)
multidrug transporter MATE
transmembrane_regions (db=TMHMM db_id=tmhmm from=385 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=361 to=380)
transmembrane_regions (db=TMHMM db_id=tmhmm from=327 to=349)
ACD77_129_10

Not on your lists

14711..16027
DNA (1317bp) protein (439aa)
hypothetical protein
Beta-lactamase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PAQ4_9BACT (db=UNIREF evalue=3.0e-86 bit_score=322.0 identity=42.89 coverage=90.2050113895216)
seg (db=Seg db_id=seg from=12 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD77_129_11

Not on your lists

comp(16038..17369)
DNA (1332bp) protein (444aa)
hypothetical protein
Outer membrane efflux protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11RQ3_CYTH3 (db=UNIREF evalue=3.0e-52 bit_score=209.0 identity=32.88 coverage=96.6216216216216)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=97 to=110)
ACD77_129_12

Not on your lists

comp(17366..20413)
DNA (3048bp) protein (1016aa)
hypothetical protein
hypothetical protein
Cation/multidrug efflux pump n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IP43_9BACT (db=UNIREF evalue=0.0 bit_score=1133.0 identity=58.9 coverage=97.9330708661417)
seg (db=Seg db_id=seg from=341 to=352)
ACD77_129_13

Not on your lists

comp(20425..21525)
DNA (1101bp) protein (367aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=162 to=183 evalue=NA)
seg (db=Seg db_id=seg from=7 to=24)
ACD77_129_14

Not on your lists

comp(21605..21784)
DNA (180bp) protein (60aa)
zf-CDGSH (db=HMMPfam db_id=PF09360 from=12 to=55 evalue=3.4e-14 interpro_id=IPR018967 interpro_description=Iron sulphur-containing domain, CDGSH-type GO=Cellular Component: intracellular membrane-bounded organelle (GO:0043231), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
no description (db=HMMSmart db_id=SM00704 from=24 to=58 evalue=0.0082 interpro_id=IPR006622 interpro_description=Iron sulphur-containing domain, CDGSH-type, subfamily GO=Cellular Component: intracellular membrane-bounded organelle (GO:0043231), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
Uncharacterized protein {ECO:0000313|EMBL:EKD31699.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD77_129_15

Not on your lists

21842..22378
DNA (537bp) protein (179aa)
hypothetical protein
gb def: TRNA/rRNA methyltransferase (db=HMMPanther db_id=PTHR12029:SF6 from=3 to=176 evalue=8.8e-72)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=3 to=176 evalue=8.8e-72)
alpha/beta knot (db=superfamily db_id=SSF75217 from=4 to=173 evalue=3.1e-37)
ACD77_129_16

Not on your lists

22380..23183
DNA (804bp) protein (268aa)
radical SAM protein
seg (db=Seg db_id=seg from=201 to=206)
MOAA_NIFB_PQQE (db=PatternScan db_id=PS01305 from=17 to=28 evalue=0.0 interpro_id=IPR000385 interpro_description=MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=2 to=229 evalue=3.9e-59)
ACD77_129_17

Not on your lists

23186..23647
DNA (462bp) protein (154aa)
Molybdenum cofactor biosynthesis protein C n=2 Tax=Brachyspira RepID=C0QYT1_BRAHW (db=UNIREF evalue=2.0e-42 bit_score=174.0 identity=57.72 coverage=96.1038961038961)
molybdenum cofactor biosynthesis protein C
MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A (db=HMMPanther db_id=PTHR22960 from=1 to=149 evalue=7.6e-57)
MoaC (db=HMMPfam db_id=PF01967 from=18 to=150 evalue=4.8e-55 interpro_id=IPR002820 interpro_description=Molybdopterin cofactor biosynthesis C (MoaC) domain GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777))
ACD77_129_18

Not on your lists

23660..24592
DNA (933bp) protein (311aa)
molybdenum cofactor synthesis protein
seg (db=Seg db_id=seg from=207 to=226)
MOCF_BIOSYNTHESIS_1 (db=PatternScan db_id=PS01078 from=216 to=229 evalue=0.0 interpro_id=IPR008284 interpro_description=Molybdenum cofactor biosynthesis, conserved site GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777))
MOLYBDOPTERIN BIOSYNTHESIS PROTEIN (db=HMMPanther db_id=PTHR10192 from=138 to=302 evalue=2.8e-45)
ACD77_129_19

Not on your lists

24603..25388
DNA (786bp) protein (262aa)
ABC transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=234 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
ACD77_129_20

Not on your lists

25382..26020
DNA (639bp) protein (213aa)
ABC transporter-like protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=131 to=145 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=209 evalue=1.3e-70)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=4 to=209 evalue=4.8e-57)
ACD77_129_21

Not on your lists

comp(26017..26292)
DNA (276bp) protein (92aa)
TPR-like (db=superfamily db_id=SSF48452 from=11 to=82 evalue=1.8e-08)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=10 to=73 evalue=7.8e-06 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR_1 (db=HMMPfam db_id=PF00515 from=35 to=67 evalue=0.00012 interpro_id=IPR001440 interpro_description=Tetratricopeptide TPR-1)
O-GLCNAC TRANSFERASE, P110 SUBUNIT-RELATED (db=HMMPanther db_id=PTHR23083:SF23 from=5 to=72 evalue=0.0008)
ACD77_129_22

Not on your lists

comp(26314..26913)
DNA (600bp) protein (200aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
ACD77_129_23

Not on your lists

comp(26924..27511)
DNA (588bp) protein (196aa)
Electron transport complex protein RnfE
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
ACD77_129_24

Not on your lists

comp(27504..28106)
DNA (603bp) protein (201aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTP6_9BACT (db=UNIREF evalue=8.0e-40 bit_score=166.0 identity=47.31 coverage=89.5522388059701)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
rnfG: electron transport complex, RnfABCDGE (db=HMMTigr db_id=TIGR01947 from=11 to=187 evalue=4.0e-50 interpro_id=IPR010209 interpro_description=Electron transport complex, RnfG GO=Molecular Function: electron carrier activity (GO:0009055), Biological Process: electron transport chain (GO:0022900))
ACD77_129_25

Not on your lists

comp(28099..29100)
DNA (1002bp) protein (334aa)
hypothetical protein
hypothetical protein
Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AT40_9FLAO (db=UNIREF evalue=5.0e-83 bit_score=311.0 identity=54.38 coverage=98.5029940119761)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. Jill Banfield (11/16/12)
ACD77_129_26

Not on your lists

comp(29115..30452)
DNA (1338bp) protein (446aa)
hypothetical protein
hypothetical protein
Electron transport complex protein n=24 Tax=Bacteroides RepID=Q5LC48_BACFN (db=UNIREF evalue=1.0e-137 bit_score=493.0 identity=55.96 coverage=99.3273542600897)
seg (db=Seg db_id=seg from=349 to=361)
Part of the six subunit complex RnfABCDGE Jill Banfield (11/16/12)
ACD77_129_27

Not on your lists

comp(30465..31325)
DNA (861bp) protein (287aa)
hypothetical protein
hypothetical protein
Ferredoxin n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MC00_9PORP (db=UNIREF evalue=2.0e-82 bit_score=309.0 identity=59.78 coverage=94.0766550522648)
seg (db=Seg db_id=seg from=12 to=23)
ACD77_129_28

Not on your lists

comp(31325..31756)
DNA (432bp) protein (144aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=126)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
seg (db=Seg db_id=seg from=80 to=111)
RseC plays a role in reduction of the SoxR iron-sulfur cluster, along with proteins encoded by the rsxABCDGE operon Jill Banfield (11/16/12)
ACD77_129_29

Not on your lists

comp(31757..32593)
DNA (837bp) protein (279aa)
hypothetical protein
seg (db=Seg db_id=seg from=3 to=20)
DUF3108 (db=HMMPfam db_id=PF11306 from=59 to=259 evalue=2.3e-25 interpro_id=IPR021457 interpro_description=Protein of unknown function DUF3108)
Uncharacterized protein {ECO:0000313|EMBL:EKD31714.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD77_129_30

Not on your lists

comp(32603..33319)
DNA (717bp) protein (239aa)
DNA helicase
Primary replicative DNA helicase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IMD3_9BACT (db=UNIREF evalue=4.0e-66 bit_score=254.0 identity=56.12 coverage=97.489539748954)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=192 evalue=1.2e-48)
DnaB_C (db=HMMPfam db_id=PF03796 from=1 to=128 evalue=2.6e-40 interpro_id=IPR007694 interpro_description=DNA helicase, DnaB-like, C-terminal GO=Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
Displaying items 1-30 of 38 in total

View Taxonomy