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ACD77_222

Alias: ACDUNK_4068.5748.10

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD77_222_1
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(3..713)
DNA (711bp) protein (237aa)
hypothetical protein
hypothetical protein
30S ribosomal protein S3 n=30 Tax=Bacteroides RepID=RS3_BACFN (db=UNIREF evalue=2.0e-102 bit_score=374.0 identity=80.47 coverage=90.295358649789)
seg (db=Seg db_id=seg from=217 to=233)
ACD77_222_2
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(715..1137)
DNA (423bp) protein (141aa)
hypothetical protein
50S ribosomal protein L22 n=2 Tax=Alistipes RepID=B0MSG5_9BACT (db=UNIREF evalue=2.0e-43 bit_score=177.0 identity=70.99 coverage=90.7801418439716)
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=22 to=129 evalue=5.0e-31 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=22 to=130 evalue=9.0e-29 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD77_222_3
GWE2_Bacteroidetes_39_28_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(1165..1428)
DNA (264bp) protein (88aa)
30S ribosomal protein S19
30S ribosomal protein S19 n=38 Tax=Bacteroidales RepID=RS19_BACFN (db=UNIREF evalue=2.0e-39 bit_score=164.0 identity=86.21 coverage=97.7272727272727)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=87 evalue=1.2e-57 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD77_222_4
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(1453..2277)
DNA (825bp) protein (275aa)
50S ribosomal protein L2
50S ribosomal protein L2
50S ribosomal protein L2 n=2 Tax=Alistipes RepID=D4IMJ4_9BACT (db=UNIREF evalue=3.0e-104 bit_score=381.0 identity=78.41 coverage=95.6363636363636)
seg (db=Seg db_id=seg from=149 to=162)
ACD77_222_5
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(2283..2597)
DNA (315bp) protein (105aa)
50S ribosomal protein L23
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=11 to=103 evalue=2.5e-24 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=5 to=103 evalue=1.5e-23 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=5 to=103 evalue=9.0e-23 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD77_222_6
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(2584..3216)
DNA (633bp) protein (211aa)
hypothetical protein
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=208 evalue=2.1e-67 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=18 to=195 evalue=2.9e-66 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=18 to=195 evalue=2.9e-66 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
ACD77_222_7
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(3223..3849)
DNA (627bp) protein (209aa)
50S ribosomal protein L3
50S ribosomal protein L3 n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSI4_9BACT (db=UNIREF evalue=2.0e-86 bit_score=321.0 identity=75.0 coverage=97.1291866028708)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=3 to=207 evalue=2.2e-118 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=208 evalue=5.7e-92)
ACD77_222_8
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(4032..4610)
DNA (579bp) protein (193aa)
hypothetical protein rbh
seg (db=Seg db_id=seg from=173 to=184)
seg (db=Seg db_id=seg from=73 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD77_222_9
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4876..5679)
DNA (804bp) protein (268aa)
transposase and inactivated derivatives (db=KEGG evalue=5.0e-18 bit_score=94.7 identity=29.55 coverage=91.4179104477612)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=6 to=132 evalue=9.8e-12)
Transposase_17 (db=HMMPfam db_id=PF01797 from=17 to=102 evalue=5.9e-08 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DD03_9PORP
ACD77_222_10
unknown

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comp(5698..5784)
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 10 items

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