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ACD78_50

Alias: ACD78_192496.8235.6

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Displaying 9 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_50_1
ACD78, Gracilibacteria, Bacteria

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comp(20..856)
DNA (837bp) protein (279aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=69)
seg (db=Seg db_id=seg from=15 to=29)
seg (db=Seg db_id=seg from=33 to=43)
ACD78_50_2
ACD78, Gracilibacteria, Bacteria

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comp(1186..2064)
DNA (879bp) protein (293aa)
seg (db=Seg db_id=seg from=257 to=278)
seg (db=Seg db_id=seg from=109 to=126)
seg 109..126 Tax=ACD78
ACD78_50_3
ACD78, Gracilibacteria, Bacteria

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2208..3242
DNA (1035bp) protein (345aa)
spoIID; stage II sporulation protein D
SpoIID (db=HMMPfam db_id=PF08486 from=148 to=246 evalue=9.1e-10 interpro_id=IPR013693 interpro_description=Sporulation stage II protein D, amidase enhancer LytB N-terminal)
stage II sporulation protein D; K06381 stage II sporulation protein D alias=ACD78_192496.8235.6G0003,ACD78_192496.8235.6_3,ACD78_C00050G00003 id=123705 tax=ACD78 species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus organism_group=BD1-5 organism_desc=BD1-5
stage II sporulation protein D; K06381 stage II sporulation protein D Tax=ACD78
ACD78_50_4
ACD78, Gracilibacteria, Bacteria

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3280..3726
DNA (447bp) protein (149aa)
hypothetical protein
seg (db=Seg db_id=seg from=26 to=37)
TIGR00244: transcriptional regulator NrdR (db=HMMTigr db_id=TIGR00244 from=1 to=146 evalue=8.7e-44 interpro_id=IPR003796 interpro_description=Ribonucleotide reductase regulator NrdR-like)
ATP-cone (db=HMMPfam db_id=PF03477 from=51 to=134 evalue=7.9e-12 interpro_id=IPR005144 interpro_description=ATP-cone)
ACD78_50_5
ACD78, Gracilibacteria, Bacteria

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3728..4690
DNA (963bp) protein (321aa)
primosome assembly protein PriA
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.1.-] alias=ACD78_192496.8235.6_5,ACD78_192496.8235.6G0005,ACD78_C00050G00005 id=123700 tax=ACD78 species=Enterobacter cancerogenus genus=Enterobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.1.-] Tax=ACD78
ACD78_50_6

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comp(4715..5518)
DNA (804bp) protein (268aa)
Exodeoxyribonuclease III Xth n=2 Tax=Desulfitobacterium hafniense RepID=B8FWT9_DESHD (db=UNIREF evalue=7.0e-92 bit_score=340.0 identity=62.45 coverage=92.5373134328358)
hypothetical protein
hypothetical protein
AP_NUCLEASE_F1_1 (db=PatternScan db_id=PS00726 from=40 to=49 evalue=0.0 interpro_id=IPR020847 interpro_description=AP endonuclease, family 1, binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD78_50_7
ACD78, Gracilibacteria, Bacteria

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comp(5587..6270)
DNA (684bp) protein (228aa)
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=227 evalue=7.1e-97 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=1.4e-81 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
50S RIBOSOMAL PROTEIN L1P (db=HMMPanther db_id=PTHR23105:SF5 from=21 to=227 evalue=7.8e-75)
minor strain Jill Banfield (11/16/12)
ACD78_50_8
ACD78, Gracilibacteria, Bacteria

Not on your lists

6511..7068
DNA (558bp) protein (186aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=72 to=83)
transmembrane_regions 7..29 Tax=ACD78
ACD78_50_9

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comp(7145..8269)
DNA (1125bp) protein (375aa)
pheS; phenylalanine-tRNA synthetase alpha subunit
seg (db=Seg db_id=seg from=110 to=121)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=42 to=374 evalue=2.0e-107)
pheS: phenylalanyl-tRNA synthetase, alpha su (db=HMMTigr db_id=TIGR00468 from=72 to=374 evalue=6.6e-100 interpro_id=IPR004529 interpro_description=Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: phenylalanyl-tRNA aminoacylat
Displaying 9 items

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