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ACD78_69

Alias: ACD78_16379.20365.22

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_69_1
ACD78, Gracilibacteria, Bacteria

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3..1118
DNA (1116bp) protein (372aa)
seg (db=Seg db_id=seg from=107 to=158)
seg (db=Seg db_id=seg from=346 to=362)
seg (db=Seg db_id=seg from=171 to=238)
seg (db=Seg db_id=seg from=241 to=254)
ACD78_69_2
ACD78, Gracilibacteria, Bacteria

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comp(1115..2308)
DNA (1194bp) protein (398aa)
DNA polymerase I
no description (db=HMMSmart db_id=SM00475 from=3 to=258 evalue=3.3e-90 interpro_id=IPR002421 interpro_description=5'-3' exonuclease, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: 5'-3' exonuclease activity (GO:0008409))
DNA POLYMERASE I (db=HMMPanther db_id=PTHR10133 from=7 to=381 evalue=5.4e-64)
no description (db=Gene3D db_id=G3DSA:3.40.50.1010 from=2 to=203 evalue=2.1e-56)
ACD78_69_3
ACD78, Gracilibacteria, Bacteria

Not on your lists

2660..3919
DNA (1260bp) protein (420aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=223 to=237)
transmembrane_regions 7..29 Tax=ACD78
ACD78_69_4
unknown

Not on your lists

3995..4915
DNA (921bp) protein (307aa)
cation diffusion facilitator family transporter
Cation efflux protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XN34_9HELI (db=UNIREF evalue=6.0e-38 bit_score=161.0 identity=41.03 coverage=93.8110749185668)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
ACD78_69_5
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(4990..5454)
DNA (465bp) protein (155aa)
4990..5454 - (rbs_motif=ATTTTT rbs_spacer=13bp)
hypothetical protein Tax=ACD78
ACD78_69_6
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(5628..6077)
DNA (450bp) protein (150aa)
AP4A hydrolase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI07_THEYD (db=UNIREF evalue=3.0e-11 bit_score=70.5 identity=36.23 coverage=81.3333333333333)
NUDIX hydrolase
NUDIX_BOX (db=PatternScan db_id=PS00893 from=42 to=63 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=8 to=149 evalue=4.4e-20 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD78_69_7
ACD78, Gracilibacteria, Bacteria

Not on your lists

6381..7499
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
no description (db=HMMSmart db_id=SM00480 from=17 to=368 evalue=2.3e-66 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=372 evalue=6.3e-66 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
DNA_pol3_beta_2 (db=HMMPfam db_id=PF02767 from=131 to=244 evalue=4.1e-25 interpro_id=IPR022637 interpro_description=DNA polymerase III, beta chain, central GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
dominant strain Jill Banfield (11/16/12)
ACD78_69_8
ACD78, Gracilibacteria, Bacteria

Not on your lists


7736..8758
DNA (1023bp) protein (341aa)
Phenylalanyl-tRNA synthetase, alpha subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SP8_SOLUE (db=UNIREF evalue=6.0e-96 bit_score=354.0 identity=47.93 coverage=98.8269794721408)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=8 to=340 evalue=1.1e-106)
ACD78_69_9
ACD78, Gracilibacteria, Bacteria

Not on your lists

8862..10466
DNA (1605bp) protein (535aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
seg (db=Seg db_id=seg from=9 to=27)
seg (db=Seg db_id=seg from=308 to=320)
seg (db=Seg db_id=seg from=504 to=515)
ACD78_69_10
ACD78, Gracilibacteria, Bacteria

Not on your lists


10638..11324
DNA (687bp) protein (229aa)
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=228 evalue=6.6e-99 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=228 evalue=9.0e-84 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
50S RIBOSOMAL PROTEIN L1P (db=HMMPanther db_id=PTHR23105:SF5 from=21 to=227 evalue=9.3e-75)
ACD78_69_11
ACD78, Gracilibacteria, Bacteria

Not on your lists

11430..12194
DNA (765bp) protein (255aa)
exodeoxyribonuclease III (EC:4.2.99.18)
AP_NUCLEASE_F1_2 (db=PatternScan db_id=PS00727 from=188 to=204 evalue=0.0 interpro_id=IPR020848 interpro_description=AP endonuclease, family 1, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
AP_NUCLEASE_F1_3 (db=PatternScan db_id=PS00728 from=214 to=225 evalue=0.0 interpro_id=IPR020848 interpro_description=AP endonuclease, family 1, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
AP_NUCLEASE_F1_1 (db=PatternScan db_id=PS00726 from=28 to=37 evalue=0.0 interpro_id=IPR020847 interpro_description=AP endonuclease, family 1, binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD78_69_12
unknown

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comp(12272..12550)
DNA (279bp) protein (93aa)
plasmid stabilization system
Genome sequencing data, contig C322 n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YJY5_MICAE (db=UNIREF evalue=3.0e-12 bit_score=74.3 identity=44.83 coverage=90.3225806451613)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=80 evalue=9.7e-14)
Plasmid_stabil (db=HMMPfam db_id=PF05016 from=5 to=73 evalue=5.4e-07 interpro_id=IPR007712 interpro_description=Plasmid stabilisation system)
ACD78_69_13
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(12543..12779)
DNA (237bp) protein (79aa)
PhdYeFM (db=HMMPfam db_id=PF02604 from=1 to=49 evalue=7.5e-10 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
YefM-like (db=superfamily db_id=SSF143120 from=1 to=48 evalue=1.2e-08)
phd_fam: prevent-host-death family protein (db=HMMTigr db_id=TIGR01552 from=3 to=55 evalue=9.9e-05 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
PhdYeFM Tax=ACD78
ACD78_69_14
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(12842..14020)
DNA (1179bp) protein (393aa)
hypothetical protein
seg (db=Seg db_id=seg from=37 to=49)
coiled-coil (db=Coil db_id=coil from=322 to=350 evalue=NA)
coiled-coil (db=Coil db_id=coil from=101 to=167 evalue=NA)
ACD78_69_15
ACD78, Gracilibacteria, Bacteria

Not on your lists

14173..16122
DNA (1950bp) protein (650aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=396 to=408)
seg (db=Seg db_id=seg from=601 to=619)
seg (db=Seg db_id=seg from=22 to=39)
ACD78_69_16
ACD78, Gracilibacteria, Bacteria

Not on your lists

16301..17062
DNA (762bp) protein (254aa)
hypothetical protein
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=13 to=246 evalue=6.8e-74)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF6 from=13 to=246 evalue=6.8e-74 interpro_id=IPR010230 interpro_description=ATPase SufC, SUF system FeS cluster assembly GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
sufC: FeS assembly ATPase SufC (db=HMMTigr db_id=TIGR01978 from=13 to=253 evalue=5.9e-72 interpro_id=IPR010230 interpro_description=ATPase SufC, SUF system FeS cluster assembly GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
ACD78_69_17
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(17142..17543)
DNA (402bp) protein (134aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=122)
ACD78_69_18
ACD78, Gracilibacteria, Bacteria

Not on your lists

17620..19008
DNA (1389bp) protein (463aa)
FeS assembly protein SufB
FeS assembly protein SufB
FeS assembly protein SufB n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJP7_9FUSO (db=UNIREF evalue=1.0e-148 bit_score=530.0 identity=57.24 coverage=96.7602591792657)
seg (db=Seg db_id=seg from=336 to=347)
ACD78_69_19
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(19043..19408)
DNA (366bp) protein (122aa)
19043..19408 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD78
ACD78_69_20
ACD78, Gracilibacteria, Bacteria

Not on your lists

19433..20095
DNA (663bp) protein (221aa)
hypothetical protein
UPF0051 (db=HMMPfam db_id=PF01458 from=36 to=193 evalue=3.9e-24 interpro_id=IPR000825 interpro_description=SUF system FeS cluster assembly, SufBD GO=Molecular Function: protein binding (GO:0005515), Biological Process: iron-sulfur cluster assembly (GO:0016226))
Stabilizer of iron transporter SufD (db=superfamily db_id=SSF101960 from=35 to=216 evalue=2.9e-23)
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD alias=ACD78_C00069G00020,ACD78_16379.20365.22G0020,ACD78_16379.20365.22_20 id=123847 tax=ACD78 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD78_69_21
ACD78, Gracilibacteria, Bacteria

Not on your lists

20203..20403
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=6 to=19)
seg 6..19 Tax=ACD78
Displaying 21 items

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