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ACD78_113

Alias: ACD78_17399.7004.26

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_113_1
ACD78, Gracilibacteria, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
1..105 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD78
ACD78_113_2
ACD78, Gracilibacteria, Bacteria

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140..550
DNA (411bp) protein (137aa)
putative transcriptional regulator, Crp/Fnr family (db=KEGG evalue=2.0e-10 bit_score=68.2 identity=36.67 coverage=84.6715328467153)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=1 to=131 evalue=3.8e-24 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=2 to=134 evalue=3.2e-20 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
cNMP_binding (db=HMMPfam db_id=PF00027 from=30 to=119 evalue=8.9e-15 interpro_id=IPR000595 interpro_description=Cyclic nucleotide-binding)
ACD78_113_3
ACD78, Gracilibacteria, Bacteria

Not on your lists

660..920
DNA (261bp) protein (87aa)
translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=12 to=85 evalue=3.4e-30 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=10 to=85 evalue=1.2e-21 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=10 to=85 evalue=1.2e-19 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD78_113_4
ACD78, Gracilibacteria, Bacteria

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1122..1487
DNA (366bp) protein (122aa)
rpsM; 30S ribosomal protein S13
seg (db=Seg db_id=seg from=110 to=121)
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=114 evalue=1.1e-65 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S/40S RIBOSOMAL PROTEIN (db=HMMPanther db_id=PTHR10871 from=1 to=120 evalue=9.6e-49)
dominant of two ACD78 strains Jill Banfield (11/16/12)
ACD78_113_5

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1643..2032
DNA (390bp) protein (130aa)
30S ribosomal protein S11
Ribosomal protein, S11p/S11a/S14e/organellar S11 types (db=HMMPIR db_id=PIRSF002131 from=1 to=129 evalue=6.7e-53 interpro_id=IPR001971 interpro_description=Ribosomal protein S11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S11 (db=HMMPanther db_id=PTHR11759:SF3 from=8 to=129 evalue=9.4e-48)
40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 (db=HMMPanther db_id=PTHR11759 from=8 to=129 evalue=9.4e-48 interpro_id=IPR001971 interpro_description=Ribosomal protein S11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_113_6
ACD78, Gracilibacteria, Bacteria

Not on your lists


2065..2691
DNA (627bp) protein (209aa)
rpsD; 30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=87 to=111 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=2 to=208 evalue=1.7e-69 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=208 evalue=2.3e-54)
ACD78_113_7
ACD78, Gracilibacteria, Bacteria

Not on your lists

2748..3728
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha
seg (db=Seg db_id=seg from=234 to=256)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=22 to=325 evalue=3.8e-80 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=22 to=230 evalue=1.3e-48 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD78_113_8
ACD78, Gracilibacteria, Bacteria

Not on your lists


3775..4146
DNA (372bp) protein (124aa)
50S ribosomal protein L17
Ribosomal_L17 (db=HMMPfam db_id=PF01196 from=22 to=122 evalue=3.2e-21 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Prokaryotic ribosomal protein L17 (db=superfamily db_id=SSF64263 from=16 to=123 evalue=1.7e-20 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=5 to=122 evalue=5.3e-19 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_113_9
ACD78, Gracilibacteria, Bacteria

Not on your lists


4172..4603
DNA (432bp) protein (144aa)
rplM; 50S ribosomal protein L13
RIBOSOMAL_L13 (db=PatternScan db_id=PS00783 from=106 to=128 evalue=0.0 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=4 to=143 evalue=7.3e-57 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545 from=13 to=143 evalue=4.8e-44 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_113_10
ACD78, Gracilibacteria, Bacteria

Not on your lists


4636..5031
DNA (396bp) protein (132aa)
rpsI; 30S ribosomal protein S9
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=5 to=131 evalue=3.3e-41 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=11 to=131 evalue=1.7e-40 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=4 to=131 evalue=2.7e-37 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD78_113_11

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5729..6181
DNA (453bp) protein (151aa)
30S ribosomal protein S7
rpsG_bact: ribosomal protein S7 (db=HMMTigr db_id=TIGR01029 from=2 to=148 evalue=1.5e-47 interpro_id=IPR005717 interpro_description=Ribosomal protein S7, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Ribosomal_S7 (db=HMMPfam db_id=PF00177 from=11 to=141 evalue=8.8e-46 interpro_id=IPR000235 interpro_description=Ribosomal protein S7 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S7 (db=superfamily db_id=SSF47973 from=1 to=141 evalue=3.7e-44 interpro_id=IPR000235 interpro_description=Ribosomal protein S7 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_113_12

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6345..6617
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCG4_9BACT (db=UNIREF evalue=6.0e-20 bit_score=99.4 identity=63.29 coverage=84.6153846153846)
50S ribosomal protein L27
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=81 evalue=1.1e-32 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L27 (db=HMMPfam db_id=PF01016 from=2 to=74 evalue=1.2e-31 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_113_13
ACD78, Gracilibacteria, Bacteria

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6851..7048
DNA (198bp) protein (66aa)
6851..7048 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD78
Displaying 13 items

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