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ACD78_120

Alias: ACD78_510429.8961.5

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_120_1
unknown

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comp(2..436)
DNA (435bp) protein (145aa)
putative cysteine desulfurase
Cysteine desulfurase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT49_9PROT (db=UNIREF evalue=1.0e-26 bit_score=121.0 identity=48.57 coverage=93.7931034482759)
seg (db=Seg db_id=seg from=81 to=95)
Aminotran_5 (db=HMMPfam db_id=PF00266 from=17 to=141 evalue=2.6e-33 interpro_id=IPR000192 interpro_description=Aminotransferase, class V/Cysteine desulfurase GO=Biological Process: metabolic process (GO:0008152))
ACD78_120_2

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comp(450..1625)
DNA (1176bp) protein (392aa)
Tyrosyl-tRNA synthetase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J284_9BACL (db=UNIREF evalue=1.0e-75 bit_score=286.0 identity=39.9 coverage=95.4081632653061)
tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1)
TYROSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11766 from=4 to=391 evalue=1.4e-85 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
tyrS: tyrosyl-tRNA synthetase (db=HMMTigr db_id=TIGR00234 from=2 to=391 evalue=9.5e-83 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
ACD78_120_3
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(1665..2240)
DNA (576bp) protein (192aa)
hypothetical protein
Nudix (db=superfamily db_id=SSF55811 from=48 to=172 evalue=4.7e-10 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=49 to=172 evalue=1.2e-07 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=53 to=171 evalue=1.7e-06 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD78_120_4

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comp(2244..2465)
DNA (222bp) protein (74aa)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FU87_9FIRM (db=UNIREF evalue=8.0e-21 bit_score=102.0 identity=63.01 coverage=97.2972972972973)
clpP2; endopeptidase ClpP
PROTEASE FAMILY S14 CLPP PROTEASE (db=HMMPanther db_id=PTHR10381 from=1 to=72 evalue=6.3e-28 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
CLP_protease (db=HMMPfam db_id=PF00574 from=1 to=72 evalue=6.4e-26 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD78_120_5
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(2416..2886)
DNA (471bp) protein (157aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=117)
seg (db=Seg db_id=seg from=125 to=137)
CLP_PROTEASE_SER (db=PatternScan db_id=PS00381 from=100 to=111 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD78_120_6
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(2900..3121)
DNA (222bp) protein (74aa)
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=3 to=73 evalue=3.8e-08 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup)
no description (db=Gene3D db_id=G3DSA:3.30.920.30 from=3 to=73 evalue=5.3e-07)
YcfA/nrd intein domain Tax=ACD78
ACD78_120_7
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(3123..3326)
DNA (204bp) protein (68aa)
3123..3326 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD78
ACD78_120_8
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(3346..4128)
DNA (783bp) protein (261aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=11 to=31)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=141 evalue=7.4e-17)
ACD78_120_9
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(4109..4285)
DNA (177bp) protein (59aa)
4109..4285 - (rbs_motif=ATTTT rbs_spacer=14bp)
hypothetical protein Tax=ACD78
ACD78_120_10
ACD78, Gracilibacteria, Bacteria

Not on your lists

4379..5170
DNA (792bp) protein (264aa)
seg (db=Seg db_id=seg from=179 to=187)
seg (db=Seg db_id=seg from=17 to=31)
seg 17..31 Tax=ACD78
ACD78_120_11
ACD78, Gracilibacteria, Bacteria

Not on your lists

5239..5598
DNA (360bp) protein (120aa)
Ribosome-binding factor A, RbfA (db=superfamily db_id=SSF89919 from=5 to=102 evalue=9.2e-15 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
RBFA (db=HMMPfam db_id=PF02033 from=5 to=107 evalue=1.4e-14 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=4 to=117 evalue=7.9e-13 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
Q4CDR4_CLOTM_Q4CDR4; (db=BlastProDom db_id=PD007327 from=33 to=93 evalue=5.0e-06 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
ACD78_120_12
ACD78, Gracilibacteria, Bacteria

Not on your lists

5582..6589
DNA (1008bp) protein (336aa)
coiled-coil (db=Coil db_id=coil from=136 to=157 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=97)
seg (db=Seg db_id=seg from=87 to=103)
coiled-coil 136..157 Tax=ACD78
ACD78_120_13
ACD78, Gracilibacteria, Bacteria

Not on your lists

6570..7046
DNA (477bp) protein (159aa)
seg (db=Seg db_id=seg from=116 to=127)
seg (db=Seg db_id=seg from=33 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions 31..53 Tax=ACD78
ACD78_120_14
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(7066..7332)
DNA (267bp) protein (89aa)
7066..7332 - (rbs_motif=TTCTT rbs_spacer=13bp)
hypothetical protein Tax=ACD78
ACD78_120_15
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(7430..8347)
DNA (918bp) protein (306aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=135 to=157)
seg (db=Seg db_id=seg from=164 to=175)
transmembrane_regions 135..157 Tax=ACD78
ACD78_120_16
ACD78, Gracilibacteria, Bacteria

Not on your lists

8468..8995
DNA (528bp) protein (176aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=97)
hypothetical protein alias=ACD78_C00120G00016,ACD78_510429.8961.5G0016,ACD78_510429.8961.5_16 id=124224 tax=ACD78 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=BD1-5 organism_desc=BD1-5
Displaying 16 items

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