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ACD78_122

Alias: ACD78_17100.8785.22

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Displaying 11 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_122_1
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(2..478)
DNA (477bp) protein (159aa)
Efflux transporter, RND family, MFP subunit
hypothetical protein; K13888 macrolide-specific efflux protein MacA alias=ACD78_C00122G00001,ACD78_17100.8785.22G0001,ACD78_17100.8785.22_1 id=124243 tax=ACD78 species=Chlorobaculum tepidum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein; K13888 macrolide-specific efflux protein MacA Tax=ACD78
ACD78_122_2
ACD78, Gracilibacteria, Bacteria

Not on your lists

674..2125
DNA (1452bp) protein (484aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=297 to=319)
transmembrane_regions 297..319 Tax=ACD78
ACD78_122_3
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(2249..2878)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=6 to=21)
seg (db=Seg db_id=seg from=62 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg 6..21 Tax=ACD78
ACD78_122_4
ACD78, Gracilibacteria, Bacteria

Not on your lists

3031..3297
DNA (267bp) protein (89aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=ACD78
ACD78_122_5
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(3381..4646)
DNA (1266bp) protein (422aa)
Sensor histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=199)
seg (db=Seg db_id=seg from=14 to=27)
ACD78_122_6
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(4762..5418)
DNA (657bp) protein (219aa)
transcriptional regulator
no description (db=HMMSmart db_id=SM00448 from=1 to=112 evalue=7.3e-39 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=187 evalue=2.1e-37 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=152 evalue=1.2e-32)
ACD78_122_7
unknown

Not on your lists


5780..6067
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=2 Tax=Fusobacterium RepID=C6JHZ5_FUSVA (db=UNIREF evalue=8.0e-10 bit_score=65.9 identity=33.7 coverage=94.7916666666667)
30S ribosomal protein S6
RIBOSOMAL_S6 (db=PatternScan db_id=PS01048 from=44 to=53 evalue=0.0 interpro_id=IPR020815 interpro_description=Ribosomal protein S6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=2 to=92 evalue=7.3e-23 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD78_122_8
ACD78, Gracilibacteria, Bacteria

Not on your lists

6092..6502
DNA (411bp) protein (137aa)
ssDNA-binding protein
seg (db=Seg db_id=seg from=111 to=123)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=119 evalue=2.4e-34 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=107 evalue=1.4e-30 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
ACD78_122_9
ACD78, Gracilibacteria, Bacteria

Not on your lists


6699..6992
DNA (294bp) protein (98aa)
SSU ribosomal protein S18p / SSU ribosomal protein S18p, zinc-independent
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=1 to=68 evalue=7.6e-21 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S18 (db=superfamily db_id=SSF46911 from=3 to=72 evalue=9.2e-20 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S18 (db=HMMPfam db_id=PF01084 from=12 to=63 evalue=1.1e-19 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_122_10
ACD78, Gracilibacteria, Bacteria

Not on your lists

7091..7447
DNA (357bp) protein (119aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD78
ACD78_122_11
ACD78, Gracilibacteria, Bacteria

Not on your lists


7576..8829
DNA (1254bp) protein (418aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucyl-tRNA synthetase n=1 Tax=Treponema denticola RepID=SYL_TREDE (db=UNIREF evalue=8.0e-132 bit_score=474.0 identity=62.6 coverage=84.9282296650718)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=44 to=54 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
Displaying 11 items

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