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ACD78_160

Alias: ACD78_502032.7778.6

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_160_1
ACD78, Gracilibacteria, Bacteria

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comp(2..286)
DNA (285bp) protein (95aa)
2..286 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD78
ACD78_160_2
ACD78, Gracilibacteria, Bacteria

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303..902
DNA (600bp) protein (200aa)
seg (db=Seg db_id=seg from=18 to=29)
seg (db=Seg db_id=seg from=43 to=56)
seg 18..29 Tax=ACD78
ACD78_160_3
unknown

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904..1167
DNA (264bp) protein (88aa)
30S ribosomal protein S19 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ7_9FIRM (db=UNIREF evalue=2.0e-29 bit_score=131.0 identity=66.67 coverage=97.7272727272727)
30S ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=87 evalue=2.5e-50 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD78_160_4
ACD78, Gracilibacteria, Bacteria

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1200..1526
DNA (327bp) protein (109aa)
50S ribosomal protein L22
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=3 to=105 evalue=7.3e-27 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=3 to=104 evalue=2.4e-25 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=108 evalue=4.0e-24 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_5
ACD78, Gracilibacteria, Bacteria

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1576..2208
DNA (633bp) protein (211aa)
30S ribosomal protein S3
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=163 to=197 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=210 evalue=1.5e-66 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=90 to=207 evalue=2.2e-49)
ACD78_160_6

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2260..2661
DNA (402bp) protein (134aa)
50S ribosomal protein L16 n=2 Tax=Arthrospira RepID=B5W6S4_SPIMA (db=UNIREF evalue=1.0e-40 bit_score=168.0 identity=59.85 coverage=97.7611940298508)
50S ribosomal protein L16
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=3.0e-73 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD78_160_7
ACD78, Gracilibacteria, Bacteria

Not on your lists

2681..2887
DNA (207bp) protein (69aa)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=13 to=59 evalue=3.2e-10 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=9 to=68 evalue=1.5e-06 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=13 to=68 evalue=0.0001 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L29 13..59 Tax=ACD78
ACD78_160_8
unknown

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2913..3140
DNA (228bp) protein (76aa)
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTL7_9FIRM (db=UNIREF evalue=7.0e-17 bit_score=89.4 identity=57.75 coverage=92.1052631578947)
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=1 to=72 evalue=4.5e-38 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=72 evalue=5.0e-28 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_9
ACD78, Gracilibacteria, Bacteria

Not on your lists


3198..3566
DNA (369bp) protein (123aa)
50S ribosomal protein L14
seg (db=Seg db_id=seg from=53 to=63)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=2.3e-75 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=122 evalue=1.6e-62 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_10
ACD78, Gracilibacteria, Bacteria

Not on your lists


3603..3911
DNA (309bp) protein (103aa)
50S ribosomal protein L24
seg (db=Seg db_id=seg from=86 to=98)
seg (db=Seg db_id=seg from=14 to=22)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_11
unknown

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3977..4516
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNN7_9RICK (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=49.15 coverage=97.2222222222222)
50S ribosomal protein L5
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=4 to=179 evalue=3.6e-63)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=4 to=179 evalue=3.6e-63 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_12

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4559..4783
DNA (225bp) protein (75aa)
30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=36 to=58 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=28 to=74 evalue=2.2e-23 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=28 to=73 evalue=1.1e-19 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_13
ACD78, Gracilibacteria, Bacteria

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4838..5224
DNA (387bp) protein (129aa)
Ribosomal protein S8
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=1 to=128 evalue=4.4e-32 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=128 evalue=7.4e-31 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=128 evalue=9.1e-27 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_160_14

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5264..5818
DNA (555bp) protein (185aa)
50S ribosomal protein L6
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=158 to=166 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=180 evalue=6.6e-87 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=183 evalue=1.1e-72)
ACD78_160_15
unknown

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5866..6207
DNA (342bp) protein (114aa)
50S ribosomal protein L18 n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NXE6_9BACE (db=UNIREF evalue=2.0e-29 bit_score=130.0 identity=60.0 coverage=92.9824561403509)
50S ribosomal protein L18
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=4 to=113 evalue=7.0e-46 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=21 to=113 evalue=3.7e-31)
ACD78_160_16
unknown

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6229..7044
DNA (816bp) protein (272aa)
rpsE; 30S ribosomal protein S5
Ribosomal protein S5 n=1 Tax=Erysipelotrichaceae bacterium 5_2_54FAA RepID=D6HS23_9FIRM (db=UNIREF evalue=3.0e-32 bit_score=142.0 identity=48.63 coverage=53.3088235294118)
seg (db=Seg db_id=seg from=26 to=37)
seg (db=Seg db_id=seg from=2 to=18)
ACD78_160_17

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7073..7528
DNA (456bp) protein (152aa)
rplO; 50S ribosomal protein L15
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=115 to=145 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=3 to=149 evalue=8.9e-51 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=5 to=149 evalue=8.1e-39 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
ACD78_160_18
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(7596..7811)
DNA (216bp) protein (72aa)
coiled-coil (db=Coil db_id=coil from=21 to=42 evalue=NA)
coiled-coil 21..42 Tax=ACD78
Displaying 18 items

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