ggKbase home page

ACD78_236

Alias: ACD71p_46880.14337.22

Search features with annotation key words

Displaying 11 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD78_236_1
ACD78, Gracilibacteria, Bacteria

Not on your lists

324..620
DNA (297bp) protein (99aa)
seg (db=Seg db_id=seg from=77 to=87)
seg 77..87 Tax=ACD78
ACD78_236_2
ACD78, Gracilibacteria, Bacteria

Not on your lists

639..5120
DNA (4482bp) protein (1494aa)
seg (db=Seg db_id=seg from=519 to=536)
seg (db=Seg db_id=seg from=318 to=330)
coiled-coil (db=Coil db_id=coil from=575 to=603 evalue=NA)
seg 519..536 Tax=ACD78
ACD78_236_3
ACD78, Gracilibacteria, Bacteria

Not on your lists

5145..5966
DNA (822bp) protein (274aa)
seg (db=Seg db_id=seg from=256 to=271)
seg 256..271 Tax=ACD78
ACD78_236_4

Not on your lists

comp(6197..10180)
DNA (3984bp) protein (1328aa)
DNA polymerase III, alpha subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D017_PELTS (db=UNIREF evalue=0.0 bit_score=789.0 identity=38.52 coverage=78.2379518072289)
DNA-directed DNA polymerase III PolC
DNA-directed DNA polymerase III PolC
seg (db=Seg db_id=seg from=374 to=385)
phylogeny indicates placement in position similar to ACD78 Jill Banfield (11/16/12)
ene phylogeny indicates is ACD78 Jill Banfield (11/16/12)
ACD78_236_5

Not on your lists


11028..11297
DNA (270bp) protein (90aa)
(db=HMMPfam db_id=PF01649 from=2 to=83 evalue=1.8e-14 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=85 evalue=2.0e-14 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.20.58.110 from=6 to=83 evalue=1.8e-11 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=1 to=86 evalue=1.1e-10 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD78_236_6

Not on your lists

11301..11807
DNA (507bp) protein (169aa)
translation initiation factor 3 (bIF-3)
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=8 to=168 evalue=1.0e-29 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=23 to=168 evalue=9.2e-29 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
(db=HMMPfam db_id=PF05198 from=5 to=76 evalue=3.7e-22 interpro_id=IPR019814 interpro_description=Translation initiation factor 3, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD78_236_7
unknown

Not on your lists


11879..12079
DNA (201bp) protein (67aa)
50S ribosomal protein L35
50S ribosomal protein L35 n=5 Tax=Fusobacterium RepID=C6JMC5_FUSVA (db=UNIREF evalue=5.0e-09 bit_score=63.5 identity=54.69 coverage=94.0298507462687)
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=4 to=30 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=1 to=64 evalue=4.7e-17)
ACD78_236_8
ACD78, Gracilibacteria, Bacteria

Not on your lists


12224..12568
DNA (345bp) protein (115aa)
rplT; 50S ribosomal protein L20
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=1.1e-38 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
(db=HMMPfam db_id=PF00453 from=2 to=109 evalue=9.5e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L20 (db=HMMPanther db_id=PTHR10986 from=1 to=114 evalue=3.3e-31 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD78_236_9
unknown

Not on your lists

13068..13445
DNA (378bp) protein (126aa)
conserved hypothetical protein TIGR00278
UPF0161 protein RSAG_03311 n=4 Tax=Ruminococcus RepID=C6JH94_9FIRM (db=UNIREF evalue=5.0e-16 bit_score=87.0 identity=51.28 coverage=53.968253968254)
(db=HMMPfam db_id=PF01809 from=3 to=78 evalue=1.6e-23 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=6 to=89 evalue=1.3e-16 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
ACD78_236_10
ACD78, Gracilibacteria, Bacteria

Not on your lists

13512..14111
DNA (600bp) protein (200aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
seg (db=Seg db_id=seg from=40 to=55)
seg (db=Seg db_id=seg from=159 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
ACD78_236_11
ACD78, Gracilibacteria, Bacteria

Not on your lists

14156..14377
DNA (222bp) protein (74aa)
BtrG-like (db=superfamily db_id=SSF110857 from=3 to=74 evalue=1.1e-06)
(db=HMMPfam db_id=PF06094 from=5 to=69 evalue=4.1e-06 interpro_id=IPR009288 interpro_description=AIG2-like)
BtrG-like Tax=ACD78
Displaying 11 items

View Taxonomy