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ACD79_48

Alias: ACD79_45295.14908.18

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_48_1
ACD79, ACD79, ACD79, ACD79, Clamydiae, Bacteria

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comp(3..134)
DNA (132bp) protein (44aa)
3..134 - (rbs_motif=None rbs_spacer=None)
ACD79_48_2

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324..506
DNA (183bp) protein (61aa)
324..506 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD26813.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_48_3

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comp(976..1161)
DNA (186bp) protein (62aa)
976..1161 - (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD26812.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_48_4

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1426..2775
DNA (1350bp) protein (450aa)
Electron transfer flavoprotein alpha/beta-subunit
Electron transfer flavoprotein alpha/beta-subunit
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QVY6_9DELT (db=UNIREF evalue=6.0e-93 bit_score=345.0 identity=50.0 coverage=74.8888888888889)
seg (db=Seg db_id=seg from=404 to=416)
ACD79_48_5

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2952..4481
DNA (1530bp) protein (510aa)
Electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QVY5_9DELT (db=UNIREF evalue=1.0e-141 bit_score=507.0 identity=48.92 coverage=99.4117647058823)
seg (db=Seg db_id=seg from=324 to=335)
ACD79_48_6

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comp(4571..4909)
DNA (339bp) protein (113aa)
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
Histidine-containing phosphotransfer domain, HPT domain (db=superfamily db_id=SSF47226 from=1 to=112 evalue=3.8e-19 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
Hpt (db=HMMPfam db_id=PF01627 from=25 to=107 evalue=2.0e-11 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
no description (db=HMMSmart db_id=SM00073 from=16 to=112 evalue=6.2e-06 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
ACD79_48_7

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comp(4937..5323)
DNA (387bp) protein (129aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=2 to=125 evalue=3.4e-31 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=5 to=122 evalue=2.8e-27)
no description (db=HMMSmart db_id=SM00448 from=3 to=114 evalue=2.5e-26 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD79_48_8

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comp(5355..6521)
DNA (1167bp) protein (389aa)
putative histidine kinase
Sensor protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVF4_9BACT (db=UNIREF evalue=5.0e-52 bit_score=208.0 identity=34.69 coverage=93.0591259640103)
seg (db=Seg db_id=seg from=297 to=308)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=144 to=385 evalue=3.9e-47)
ACD79_48_9

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comp(6571..7290)
DNA (720bp) protein (240aa)
Response regulator receiver modulated CheB methylesterase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWH5_9DELT (db=UNIREF evalue=3.0e-80 bit_score=301.0 identity=60.49 coverage=99.1666666666667)
response regulator receiver modulated chemotaxis protein CheB (EC:3.1.1.61)
response regulator receiver modulated chemotaxis protein CheB (EC:3.1.1.61)
Methylesterase CheB, C-terminal domain (db=superfamily db_id=SSF52738 from=48 to=239 evalue=2.7e-65 interpro_id=IPR000673 interpro_description=Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Cellular Component: cytoplasm (GO:0005737), Biological Process: chemotaxis (GO:0006935), Molecular Function: protei
ACD79_48_10

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comp(7650..8108)
DNA (459bp) protein (153aa)
hypothetical protein
CheC-like (db=superfamily db_id=SSF103039 from=1 to=152 evalue=3.0e-11)
hypothetical protein alias=ACD79_45295.14908.18G0010,ACD79_45295.14908.18_10,ACD79_C00049G00010 id=125332 tax=ACD79 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD26803.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_48_11

Not on your lists

comp(8098..8487)
DNA (390bp) protein (130aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=2 to=124 evalue=1.7e-30 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=3 to=119 evalue=4.4e-27 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Response_reg (db=HMMPfam db_id=PF00072 from=5 to=119 evalue=7.0e-26 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD79_48_12

Not on your lists

comp(8529..9008)
DNA (480bp) protein (160aa)
CheD, stimulates methylation of MCP protein
CheD (db=HMMPfam db_id=PF03975 from=48 to=152 evalue=5.4e-25 interpro_id=IPR005659 interpro_description=Chemoreceptor glutamine deamidase cheD GO=Biological Process: chemotaxis (GO:0006935), Molecular Function: protein-glutamine glutaminase activity (GO:0050568))
CheD (db=HAMAP db_id=MF_01440 from=1 to=156 evalue=23.229 interpro_id=IPR005659 interpro_description=Chemoreceptor glutamine deamidase cheD GO=Biological Process: chemotaxis (GO:0006935), Molecular Function: protein-glutamine glutaminase activity (GO:0050568))
CheD, stimulates methylation of MCP protein; K03411 chemotaxis protein CheD [EC:3.5.1.44] alias=ACD79_45295.14908.18G0012,ACD79_45295.14908.18_12,ACD79_C00049G00012 id=125333 tax=ACD79 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
ACD79_48_13

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9362..9706
DNA (345bp) protein (115aa)
seg (db=Seg db_id=seg from=88 to=103)
seg (db=Seg db_id=seg from=11 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD26801.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_48_14

Not on your lists

comp(9909..11018)
DNA (1110bp) protein (370aa)
CheA signal transduction histidine kinase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0K1_DESRD (db=UNIREF evalue=2.0e-109 bit_score=399.0 identity=52.32 coverage=98.3783783783784)
CheA signal transduction histidine kinase
CheA signal transduction histidine kinase
CHEMOTAXIS SENSOR HISTIDINE KINASE/CHE A (db=HMMPanther db_id=PTHR22617:SF6 from=1 to=364 evalue=1.3e-143)
ACD79_48_15

Not on your lists

11474..11755
DNA (282bp) protein (94aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
seg (db=Seg db_id=seg from=37 to=50)
seg (db=Seg db_id=seg from=54 to=68)
seg (db=Seg db_id=seg from=75 to=91)
ACD79_48_16

Not on your lists

comp(12403..12924)
DNA (522bp) protein (174aa)
response regulator receiver protein
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=27 to=160 evalue=5.1e-25)
CheY-like (db=superfamily db_id=SSF52172 from=27 to=160 evalue=8.0e-25 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=33 to=157 evalue=9.9e-21 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD79_48_17

Not on your lists

13121..14215
DNA (1095bp) protein (365aa)
lptF; lipopolysaccharide ABC transporter membrane protein LptF
seg (db=Seg db_id=seg from=324 to=335)
seg (db=Seg db_id=seg from=16 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD79_48_18

Not on your lists

14212..14946
DNA (735bp) protein (245aa)
putative permease, YjgP/YjgQ family
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
Displaying 18 items

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