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ACD79_50

Alias: ACD79_5943.26061.12

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_50_1
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

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1..678
DNA (678bp) protein (226aa)
radical SAM protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=22 to=224 evalue=1.8e-32)
Radical_SAM (db=HMMPfam db_id=PF04055 from=28 to=171 evalue=6.4e-17 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
radical SAM domain protein alias=ACD79_5943.26061.12G0001,ACD79_5943.26061.12_1,ACD79_C00051G00001 id=125358 tax=ACD79 species=Geobacter sp. FRC-32 genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
ACD79_50_2

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647..1147
DNA (501bp) protein (167aa)
Radical SAM domain protein
Radical SAM domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U7G4_9DELT (db=UNIREF evalue=1.0e-53 bit_score=211.0 identity=58.33 coverage=92.814371257485)
Radical SAM protein {ECO:0000313|EMBL:EKD28531.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_50_3

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1172..2380
DNA (1209bp) protein (403aa)
putative D-mycarose 3-C-methyltransferase
seg (db=Seg db_id=seg from=238 to=247)
seg (db=Seg db_id=seg from=291 to=299)
Methyltransf_14 (db=HMMPfam db_id=PF08484 from=275 to=389 evalue=6.1e-19 interpro_id=IPR013691 interpro_description=C-methyltransferase)
ACD79_50_4

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2409..2924
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=2 Tax=Chroococcales RepID=Q4BX29_CROWT (db=UNIREF evalue=6.0e-44 bit_score=179.0 identity=55.41 coverage=90.6976744186046)
hypothetical protein
seg (db=Seg db_id=seg from=17 to=29)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=51 to=125 evalue=4.7e-06 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
ACD79_50_5

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2921..4177
DNA (1257bp) protein (419aa)
methyltransferase
methyltransferase
D-mycarose 3-C-methyltransferase n=4 Tax=Leptospira interrogans RepID=D4HSY6_LEPIN (db=UNIREF evalue=2.0e-102 bit_score=376.0 identity=49.88 coverage=94.9880668257756)
Methyltransf_14 (db=HMMPfam db_id=PF08484 from=240 to=407 evalue=5.4e-48 interpro_id=IPR013691 interpro_description=C-methyltransferase)
ACD79_50_6

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4174..5256
DNA (1083bp) protein (361aa)
per; perosamine synthetase
per; perosamine synthetase
Perosamine synthetase n=3 Tax=Leptospira interrogans RepID=D4HSQ4_LEPIN (db=UNIREF evalue=1.0e-84 bit_score=317.0 identity=52.81 coverage=98.0609418282548)
seg (db=Seg db_id=seg from=112 to=123)
ACD79_50_7

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5279..6025
DNA (747bp) protein (249aa)
Methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=50 to=228 evalue=2.1e-18)
Methyltransf_12 (db=HMMPfam db_id=PF08242 from=55 to=157 evalue=6.8e-09 interpro_id=IPR013217 interpro_description=Methyltransferase type 12)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=51 to=228 evalue=1.4e-08)
ACD79_50_8

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6030..9044
DNA (3015bp) protein (1005aa)
LA1599-like protein n=1 Tax=Leptospira interrogans RepID=Q2I7G8_LEPIN (db=UNIREF evalue=2.0e-67 bit_score=261.0 identity=39.1 coverage=36.1194029850746)
hypothetical protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=154 to=431 evalue=3.6e-34)
no description (db=HMMSmart db_id=SM00729 from=199 to=411 evalue=4.7e-23 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)
ACD79_50_9

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9047..10000
DNA (954bp) protein (318aa)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
seg (db=Seg db_id=seg from=64 to=75)
YWTD domain (db=superfamily db_id=SSF63825 from=44 to=316 evalue=1.3e-11)
no description (db=Gene3D db_id=G3DSA:2.120.10.30 from=38 to=315 evalue=3.9e-06 interpro_id=IPR011042 interpro_description=Six-bladed beta-propeller, TolB-like)
ACD79_50_10

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10023..11090
DNA (1068bp) protein (356aa)
nucleotidyl transferase
nucleotidyl transferase
Nucleotidyl transferase n=2 Tax=Thermoanaerobacteraceae RepID=D3T758_THEIA (db=UNIREF evalue=2.0e-96 bit_score=356.0 identity=49.86 coverage=97.752808988764)
seg (db=Seg db_id=seg from=110 to=123)
ACD79_50_11

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11087..11761
DNA (675bp) protein (225aa)
hypothetical protein
Formyltransferase (db=superfamily db_id=SSF53328 from=4 to=173 evalue=4.2e-24 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=4 to=174 evalue=6.2e-18 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
Formyl_trans_N (db=HMMPfam db_id=PF00551 from=59 to=136 evalue=2.1e-15 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD79_50_12

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11754..12785
DNA (1032bp) protein (344aa)
N-acetylneuraminate synthase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKG5_MOOTA (db=UNIREF evalue=2.0e-96 bit_score=355.0 identity=49.27 coverage=97.3837209302326)
N-acetylneuraminate synthase (EC:2.5.1.56)
N-acetylneuraminate synthase (EC:2.5.1.56)
NeuB_NnaB: N-acetylneuraminate synthase (db=HMMTigr db_id=TIGR03569 from=4 to=335 evalue=4.7e-181 interpro_id=IPR020007 interpro_description=N-acetylneuraminate synthase)
ACD79_50_13

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12778..13968
DNA (1191bp) protein (397aa)
UDP-N-acetyl-D-glucosamine 2-epimerase
UDP-N-acetyl-D-glucosamine 2-epimerase
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30T05_SULDN (db=UNIREF evalue=7.0e-92 bit_score=341.0 identity=50.13 coverage=95.9697732997481)
seg (db=Seg db_id=seg from=271 to=282)
ACD79_50_14

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13962..14633
DNA (672bp) protein (224aa)
N-acylneuraminate cytidylyltransferase
seg (db=Seg db_id=seg from=47 to=60)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=222 evalue=7.2e-60)
CMP-N-ACETYLNEURAMINIC ACID SYNTHASE (db=HMMPanther db_id=PTHR21485 from=12 to=223 evalue=1.1e-53)
ACD79_50_15

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14641..15492
DNA (852bp) protein (284aa)
Histidine biosynthesis protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E201_GEOLS (db=UNIREF evalue=4.0e-94 bit_score=347.0 identity=57.45 coverage=98.2394366197183)
histidine biosynthesis protein rbh
histidine biosynthesis protein rbh
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=2 to=242 evalue=4.8e-66 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD79_50_16

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15505..16146
DNA (642bp) protein (214aa)
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase, glutamine amidotransferase HisH subunit (db=HMMPIR db_id=PIRSF000495 from=1 to=212 evalue=2.5e-92 interpro_id=IPR016226 interpro_description=Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit H GO=Biological Process: histidine biosynthetic process (GO:0000105), Cellular Component: cytoplasm (GO:0005737), Molecular Function: transferase activity (GO:0016740))
IMP_synth_hisH: imidazole glycerol pho (db=HMMTigr db_id=TIGR01855 from=2 to=209 evalue=1.1e-75 interpro_id=IPR010139 interpro_description=Imidazole glycerol phosphate synthase, subunit H GO=Biological Process: histidine biosynthetic process (GO:0000105), Cellular Component: cytoplasm (GO:0005737), Molecular Function: transferase activity, transferring pentosyl groups (GO:0016763))
no description (db=Gene3D db_id=G3DSA:3.40.50.880 from=2 to=208 evalue=1.8e-66)
ACD79_50_17

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16151..17329
DNA (1179bp) protein (393aa)
pseA; pseudaminic acid biosynthesis protein
pseA; pseudaminic acid biosynthesis protein
Putative uncharacterized protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BGE2_9PROT (db=UNIREF evalue=2.0e-113 bit_score=412.0 identity=49.51 coverage=99.4910941475827)
WbuX: N-acetyl sugar amidotransferase (db=HMMTigr db_id=TIGR03573 from=17 to=364 evalue=1.1e-125 interpro_id=IPR020022 interpro_description=N-acetyl sugar amidotransferase)
ACD79_50_18

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17332..18384
DNA (1053bp) protein (351aa)
molybdopterin cofactor synthesis protein A
Putative molybdenum cofactor biosynthesis protein n=1 Tax=Campylobacter jejuni subsp. jejuni HB93-13 RepID=A3ZCG8_CAMJE (db=UNIREF evalue=4.0e-61 bit_score=238.0 identity=43.85 coverage=86.8945868945869)
seg (db=Seg db_id=seg from=133 to=145)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=59 to=344 evalue=3.2e-46)
ACD79_50_19

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18405..19184
DNA (780bp) protein (260aa)
methylase/methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=257 evalue=3.7e-18)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=51 to=148 evalue=1.7e-11 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=47 to=196 evalue=1.6e-10)
ACD79_50_20

Not on your lists

19202..20959
DNA (1758bp) protein (586aa)
seg (db=Seg db_id=seg from=283 to=297)
coiled-coil (db=Coil db_id=coil from=323 to=344 evalue=NA)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=371 evalue=4.9e-20)
TPR-like (db=superfamily db_id=SSF48452 from=381 to=584 evalue=1.9e-14)
ACD79_50_21

Not on your lists

21082..22158
DNA (1077bp) protein (359aa)
LPS biosynthesis protein WbpG
ExsB family protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC89_MAGSM (db=UNIREF evalue=3.0e-86 bit_score=322.0 identity=45.3 coverage=97.2144846796657)
seg (db=Seg db_id=seg from=44 to=61)
coiled-coil (db=Coil db_id=coil from=45 to=66 evalue=NA)
ACD79_50_22

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22186..23823
DNA (1638bp) protein (546aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
seg (db=Seg db_id=seg from=116 to=134)
seg (db=Seg db_id=seg from=150 to=169)
ACD79_50_23

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24049..24780
DNA (732bp) protein (244aa)
24049..24780 + (rbs_motif=AGGAGG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD26240.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_50_24

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24740..24850
DNA (111bp) protein (37aa)
24740..24850 + (rbs_motif=AGxAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD26241.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_50_25

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25121..26098
DNA (978bp) protein (326aa)
hypothetical protein
hypothetical protein
UPI0001D5BCB8 related cluster n=1 Tax=unknown RepID=UPI0001D5BCB8 (db=UNIREF evalue=8.0e-102 bit_score=373.0 identity=55.21 coverage=99.079754601227)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=178 evalue=1.4e-15)
Displaying 25 items

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