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ACD79_103

Alias: ACD79_36162.3014.16

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_103_1

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comp(3..113)
DNA (111bp) protein (37aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKD27411.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_103_2

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257..412
DNA (156bp) protein (52aa)
putative PP-loop superfamily ATPase
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=6 to=50 evalue=3.8e-14)
ExsB (db=HMMPfam db_id=PF06508 from=7 to=41 evalue=5.5e-13 interpro_id=IPR018317 interpro_description=Queuosine synthesis-like)
ARGININOSUCCINATE SYNTHASE (db=HMMPanther db_id=PTHR11587 from=4 to=40 evalue=4.3e-05 interpro_id=IPR001518 interpro_description=Argininosuccinate synthase GO=Molecular Function: argininosuccinate synthase activity (GO:0004055), Molecular Function: ATP binding (GO:0005524), Biological Process: arginine biosynthetic process (GO:0006526))
ACD79_103_3

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413..1120
DNA (708bp) protein (236aa)
preQ(0) biosynthesis protein QueC
ExsB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4N4_9PLAN (db=UNIREF evalue=2.0e-72 bit_score=275.0 identity=61.97 coverage=98.3050847457627)
seg (db=Seg db_id=seg from=171 to=186)
Uncharacterised conserved protein, ExsB type (db=HMMPIR db_id=PIRSF006293 from=5 to=235 evalue=6.5e-108 interpro_id=IPR004479 interpro_description=Exoenzyme S synthesis protein B/queuosine synthesis GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD79_103_4

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1129..1896
DNA (768bp) protein (256aa)
RNA methyltransferase
Predicted tRNA/rRNA methyltransferase, LasT type (db=HMMPIR db_id=PIRSF004808 from=7 to=245 evalue=9.0e-68 interpro_id=IPR004384 interpro_description=RNA methyltransferase TrmH, group 1 GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
rRNA_methyl_1: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00050 from=7 to=241 evalue=7.8e-46 interpro_id=IPR004384 interpro_description=RNA methyltransferase TrmH, group 1 GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
alpha/beta knot (db=superfamily db_id=SSF75217 from=8 to=187 evalue=7.0e-30)
ACD79_103_5

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1893..2636
DNA (744bp) protein (248aa)
RNA methyltransferase
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=51 to=246 evalue=6.4e-54)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=51 to=246 evalue=6.4e-54)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=4 to=244 evalue=1.4e-47 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH, group 3 GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
ACD79_103_6
unknown

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2985..3050
DNA (66bp) protein (22aa)
2985..3050 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Displaying 6 items

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